New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 887383 = | 46 (0.850) | 5 (0.100) | 5/254 | NT | 9.6% | coding (417/1608 nt) | PP_0768 | TPR domain‑containing response regulator |
? | NC_002947 | 887429 = | 50 (0.970) | coding (463/1608 nt) | PP_0768 | TPR domain‑containing response regulator |
TCACTGCCGAGAGCAGTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCT > NC_002947/887235‑887529 | tCACTGCCGAGAGCAGTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAg < 7:270384/149‑1 (MQ=255) cTGCGGAGAGCAGTCAGGCGATTGTTCTCACCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCCTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCATg‑cg > 4:232302/1‑149 (MQ=255) tGCCGAGAGCAGTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGg‑cgc > 7:262886/1‑149 (MQ=255) tGCCGAGAGCAGTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGg‑cgc > 7:71840/1‑149 (MQ=255) ccGAGAGCAGTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGg‑cgc < 4:97130/147‑1 (MQ=255) gTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAAc > 7:21929/1‑149 (MQ=255) tCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAAcc > 1:183254/1‑149 (MQ=255) gCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTcc > 5:81428/1‑149 (MQ=255) gATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCgg > 4:63651/1‑149 (MQ=255) gATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCgg < 3:101577/149‑1 (MQ=255) gATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCgg < 8:150732/149‑1 (MQ=255) aTTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGc < 3:63651/149‑1 (MQ=255) gTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCg < 8:262886/148‑1 (MQ=255) gccaggatggccttgaggaatttttccagttcctcgaaacggttgaggttgcgcagggcatcggcccggtagcgcaagcacaagggcgccaggcgcggatccttcttgcacagctcGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACt < 1:139641‑M1/33‑1 (MQ=255) cATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTggcgg > 7:256481/1‑149 (MQ=255) cATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTggcgg < 4:74009/149‑1 (MQ=255) aggaatttttccagttcctcgaaacggttgaggttgcgcagggcatcggcccggtagcgcaagcacaagggcgccaggcgcggatccttcttgcacagctcGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGa > 2:139641‑M1/102‑149 (MQ=255) aGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAg < 1:127220/149‑1 (MQ=255) cccGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCTAAGTACTGGCGGCCTGCGCCGAGCt < 8:21929/149‑1 (MQ=255) tttttccagttcctcgaaacggttgaggttgcgcagggcatcggcccggtagcgcaagcacaagggcgccaggcgcggatccttcttgcacagctcGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCtgt > 1:308913‑M1/97‑149 (MQ=255) ttccagttcctcgaaacggttgaggttgcgcagggcatcggcccggtagcgcaagcacaagggcgccaggcgcggatccttcttgcacagctcGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCtg > 3:294395‑M1/94‑145 (MQ=255) ttccagttcctcgaaacggttgaggttgcgcagggcatcggcccggtagcgcaagcacaagggcgccaggcgcggatccttcttgcacagctcGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCtg < 4:294395‑M1/52‑1 (MQ=255) ccTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCaagaag < 1:646/148‑1 (MQ=255) ccTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCaagaa < 5:26470/147‑1 (MQ=255) ccTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCaagaa < 3:293764/147‑1 (MQ=255) cAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCcgc < 3:162600/149‑1 (MQ=255) aCCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGcc > 6:59186/1‑149 (MQ=255) cGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCg > 5:170320/1‑123 (MQ=255) cGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCg < 6:170320/123‑1 (MQ=255) gttgaggttgcgcagggcatcggcccggtagcgcaagcacaagggcgccaggcgcggatccttcttgcacagctcGg‑cg > 6:175201‑M1/76‑79 (MQ=255) ccGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCt > 1:85589/1‑149 (MQ=255) cGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCtt < 2:78549/149‑1 (MQ=255) ggTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTtgt < 8:256481/149‑1 (MQ=255) gTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCCGG‑CGCTGGCCCGCACCCGTCCGGCCGCAGTACTGGCGGCCGGCGCCGCGCGGGGCCAGCGGGCGCCGCGCCTGGCGCCCGtgtg > 7:48865/1‑149 (MQ=255) ggcctggccCAGCGTGTCGAGAAACTGTTCCCGCGCATGACGTTGCTGCAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCTGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCGTTGTGCt < 3:232302/148‑1 (MQ=255) gcctggccCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCtt < 2:85589/148‑1 (MQ=255) cctggccCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTgc < 8:71840/149‑1 (MQ=255) gccCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTgcgc < 8:294874/147‑1 (MQ=255) ccAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGTAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTAcc > 5:22221/1‑149 (MQ=255) gCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCggg > 6:2711/1‑149 (MQ=255) cGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGc < 5:2711/149‑1 (MQ=255) gtgtCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGcc < 6:346459/149‑1 (MQ=255) gtCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGa > 1:49577/1‑149 (MQ=255) gagaAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGc > 4:21665/1‑149 (MQ=255) gagaAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGc > 5:11795/1‑149 (MQ=255) ccAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAAc < 3:21665/148‑1 (MQ=255) cAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCt > 8:28407/1‑149 (MQ=255) gcgcAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCCCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTc > 6:222743/1‑148 (MQ=255) aaGACGTTGCTGAAGCCGATCCTGCAGGTCGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAAcc > 1:19570/1‑149 (MQ=255) cGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTc < 7:28407/149‑1 (MQ=255) ttGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGtt < 6:329564/145‑1 (MQ=255) ttGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGtt > 5:329564/1‑145 (MQ=255) gCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTc < 6:69984/145‑1 (MQ=255) gCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTc > 5:69984/1‑145 (MQ=255) tGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAAc > 3:264761/1‑131 (MQ=255) tGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAAc < 4:264761/131‑1 (MQ=255) aaGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACt > 7:125667/1‑149 (MQ=255) aGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCt > 6:65443/1‑148 (MQ=255) | TCACTGCCGAGAGCAGTCAGGCGATTGTTCTCAGCGCCATCGAGCACGAGCCCGATGCCTACCTGACCAAACCGTTCAACCGGGTTGGCCTGGCCCAGCGTGTCGAGAAACTGTTCCAGCGCAAGACGTTGCTGAAGCCGATCCTGCAGG‑CGCTGGACCGCAACCGTCCGGCCGAAGTACTGGCGGCCTGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCT > NC_002947/887235‑887529 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |