| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1720173 = | 53 (0.980) | 5 (0.100) | 5/250 | NT | 9.2% | intergenic (‑163/‑88) | PP_1515/PP_1516 | Transcriptional regulator, tetR family/RND membrane fusion protein |
| ? | NC_002947 | 1720205 = | 49 (0.960) | intergenic (‑195/‑56) | PP_1515/PP_1516 | Transcriptional regulator, tetR family/RND membrane fusion protein | |||||
CACACGCCGCCAGAAGCAGGGCAGCGGCGGCGGGCAGAGCGATGGACAAGGCATGGCGCAACATGATGAATCCTTTCGCGGAGTGCACATTTAATATTTGTACTGGCTGGTATATTAAATCAGCGCAACGATGCCGGGAAGGGCATGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1720324‑1720173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgctgATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGGCGTGTGGTCAGGAAGCCGCCCCACCCGCCGCGC > NC_002947/1720205‑1720351 CACACGCCGCCAGAAGCAGGGCAGCGGCGGCGGGCAGAGCGATGGACAAGGCATGGCGCAACATGATGAATCCTTTCGCGGAGTGCACATTTAATATTTGTACTGGCTGGTATATTAAATCAGCGCAACGATGCCGGGAAGGGCATGCG > 3:230219/1‑149CACACGCCGCCAGAAGCAGGGCAGCGGCGGCGGGCAGAGCGATGGACAAGGCATGGCGCAACATGATGAATCCTTTCGCGGAGTGCACATTTAATATTTGCACTGGCTGGTATATTAAATCAGCGCAACGATGCCGGGAAGGGCATGCG > 6:163040/1‑149 ACGCCGCCAGAAGCAGGGCAGCGGCGGCGGGCAGAGCGATGGACAAGGCATGGCGCAACATGATGAATCCTTTCGCGGAGTGCACATTTAATATTTGTACTGGCTGGTATATTAAATCAGCGCAACGATGCCGGGAAGGGCATGCGCTG > 3:4961/1‑149 TGGTATATTAAATCAGCGCAACGATGCCGGGAAGGGCATGCGCTGATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTG > 2:31337/1‑149 AATCAGCGCAACGATGCCGGGAAGGGCATGCGCTGGTTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGG < 1:194869/149‑1 AATCAGCGCAACGATGCCGGGAAGGGCATGCGCTGGTTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGG > 1:328500/1‑149 GCGCAACGATGCCGGGAAGGGCATGCGCTGATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGC < 7:80316/95‑1 GCGCAACGATGCCGGGAAGGGCATGCGCTGATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGC > 8:80316/1‑95 GCTGATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGGCGTGTGGTCAGGAAGCCGCCCCACCCGCCGC < 3:224193/149‑1 GCTGATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGGCGTGTGGTCAGGAAGCCGCCCCACCCGCCGC > 8:103136/1‑149 TGATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGGCGTGTGGTCAGGAAGCCGCCCCACCCGCCGCGC > 6:120135/1‑149 CACACGCCGCCAGAAGCAGGGCAGCGGCGGCGGGCAGAGCGATGGACAAGGCATGGCGCAACATGATGAATCCTTTCGCGGAGTGCACATTTAATATTTGTACTGGCTGGTATATTAAATCAGCGCAACGATGCCGGGAAGGGCATGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1720324‑1720173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgctgATTTAATATACCAGCCAGTACAAATATTAAATGTGCACTCCGCGAAAGGATTCATCATGTTGCGCCATGCCTTGTCCATCGCTCTGCCCGCCGCCGCTGCCCTGCTTCTGGCGGCGTGTGGTCAGGAAGCCGCCCCACCCGCCGCGC > NC_002947/1720205‑1720351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |