New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2403799 =	58 (1.080)	5 (0.100)	4/244	NT	8.1%	coding (426/1209 nt)	PP_2106	ammonium transporter
	?	NC_002947	2403860 =	60 (1.210)					coding (487/1209 nt)	PP_2106	ammonium transporter

TCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2403861‑2403799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgttccacGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGGGCT  >  NC_002947/2403860‑2404007                                                                                                                                                                                                                     TCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCG                                                                >  3:187600/1‑149   GTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCTGTGGGCGG                                                               >  3:92155/1‑148   GTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGC                                                                          >  7:184536/1‑137   GTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGC                                                                          <  8:184536/137‑1                               AGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCTGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGC                                  <  4:92155/149‑1                                                    TTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTC              <  4:187600/148‑1                                                            CCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTG      <  2:292829/148‑1                                                            CCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTG      <  4:303592/148‑1                                                            CCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTG      <  7:171403/148‑1                                                             CACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGGG    >  5:166631/1‑149                                                              ACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGGGC   >  3:42398/1‑149                                                              ACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGGGC   >  8:7637/1‑149                                                              ACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCG                           >  3:321759/1‑125                                                              ACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCG                           <  4:321759/125‑1                                                               CGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGGGCT  <  6:329176/149‑1                                                                                                                                                                                                                     TCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2403861‑2403799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgttccacGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGGGCT  >  NC_002947/2403860‑2404007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.