| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2547980 = | 39 (0.720) | 4 (0.080) | 3/250 | NT | 10.4% | coding (222/888 nt) | rhtA | threonine/homoserine exporter |
| ? | NC_002947 | 2548026 = | 32 (0.630) | coding (176/888 nt) | rhtA | threonine/homoserine exporter | |||||
ATCGATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2548133‑2547980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGAT > NC_002947/2548026‑2548133 ATCGATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGC > 1:266499/1‑149 TTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAAT > 3:15297/1‑149 GCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGG > 1:228211/1‑149 GCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGG > 7:179188/1‑149 TATATTGCG‑CCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACT > 3:78074/1‑148 cgCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGAT < 4:78074/147‑1 ATCGATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2548133‑2547980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGAT > NC_002947/2548026‑2548133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |