New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2547980 =	39 (0.720)	4 (0.080)	3/250	NT	10.4%	coding (222/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	2548026 =	32 (0.630)					coding (176/888 nt)	rhtA	threonine/homoserine exporter

GGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAA  >  NC_002947/2547881‑2548165                                                                                                                                                   |                                                                                                                                            ggTGAATTCCAGGGCGACGTCGATACCGATTGGTACCGTTTGAAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAGTATaa                                                                                                                                          <  7:303558/149‑1 (MQ=255) agtccggcgcctccctggccaaaagcatgttcccgatcgtcggcgcacaaggcactaccaccctgcgcctgatcttcgccagcatcatcatgctgcttatATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGG‑CGCAAtata                                                                                                                                           >  3:78074‑M1/101‑148 (MQ=255)    ccggcgcctccctggccaaaagcatgttcccgatcgtcggcgcacaaggcactaccaccctgcgcctgatcttcgccagcatcatcatgctgcttatATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAagc                                                                                                                                        >  7:179188‑M1/98‑149 (MQ=255)    ccggcgcctccctggccaaaagcatgttcccgatcgtcggcgcacaaggcactaccaccctgcgcctgatcttcgccagcatcatcatgctgcttatATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAagc                                                                                                                                        >  1:228211‑M1/98‑149 (MQ=255)     aaTTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAagca                                                                                                                                       <  4:11776/148‑1 (MQ=255)            gggCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCatgatg                                                                                                                               <  8:63891/149‑1 (MQ=255)              gCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCatgatgat                                                                                                                             <  1:58268/149‑1 (MQ=255)                gACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGc                                                                                                                           >  1:297888/1‑149 (MQ=255)                      gATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCg                                                                                                                      >  1:277173/1‑148 (MQ=255)                           cGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGAt                                                                                                                 >  1:129656/1‑148 (MQ=255)                                      gTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGggt                                                                                                     >  6:229625/1‑149 (MQ=255)                                                   tataGAAGAGGACGTTCATGCCGCCG‑TGTGCCCTGCCGTAGATGCCCACATTGCGCCTCGTGGTGGAGGTCATGCGTACCCTCCACTGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTATTGCCTtgt                                                                                        <  2:256203/149‑1 (MQ=255)                                                   tataGAAGAGGAAGTTCATGCCGCCCGAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTtg                                                                                         >  1:4757/1‑149 (MQ=255)                                                     taGAAGAGGAAGTTCATGCCGCCC‑AGTGCGATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTgc                                                                                      >  4:15297/1‑149 (MQ=255)                                                          gagGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCcga                                                                                 >  7:5564/1‑149 (MQ=255)                                                           agGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCcgac                                                                                >  5:26759/1‑149 (MQ=255)                                                             gAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCcgacga                                                                              >  7:195205/1‑149 (MQ=255)                                                                       ccgccg‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATTATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACa                                                                     <  3:262598/148‑1 (MQ=255)                                                                       ccgccC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACAt                                                                    <  2:277173/149‑1 (MQ=255)                                                                               gTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTg                                                             <  2:4757/149‑1 (MQ=255)                                                                                tGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTgg                                                            <  4:155223/149‑1 (MQ=255)                                                                                  ccATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGc                                                           <  2:129656/148‑1 (MQ=255)                                                                                    aTGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAg                                                        <  2:297888/149‑1 (MQ=255)                                                                                         gTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAgg                                                   >  2:266499/1‑149 (MQ=255)                                                                                              tGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                              <  8:195205/149‑1 (MQ=255)                                                                                              tGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                              >  2:143788/1‑149 (MQ=255)                                                                                               gcttatattgcgcccgtggcgggtacgcatgaccgccaacacgttgcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCgg                                             >  7:179188‑M2/53‑149 (MQ=255)                                                                                               gcttatattgcgcccgtggcgggtacgcatgaccgccaacacgttgcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCgg                                             >  1:228211‑M2/53‑149 (MQ=255)                                                                                               gACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                              >  8:105177/1‑148 (MQ=255)                                                                                                  cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACt                                          >  8:152525/1‑149 (MQ=255)                                                                                                   tatattgcgccgtggcgggtacgcatgaccgccaacacgttgcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACt                                          >  3:78074‑M2/49‑148 (MQ=255)                                                                                                     ATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGaa                                       >  3:15297‑M1/1‑149 (MQ=255)                                                                                                          cgccgtggcgggtacgcatgaccgccaacacgttgcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGAt                                  <  4:78074‑M2/108‑1 (MQ=255)                                                                                                          GCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGAt                                  >  1:266499‑M1/1‑149 (MQ=255)                                                                                                                     gCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGAt                       <  4:138083/149‑1 (MQ=255)                                                                                                                        gTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAg                    <  3:83613/149‑1 (MQ=255)                                                                                                                        gTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAg                    <  1:143788/149‑1 (MQ=255)                                                                                                                          cATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCa                  <  5:318942/149‑1 (MQ=255)                                                                                                                                tACCCGCCACGGGCGCAATATAAGCAGCATGATGATGGTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGAGGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGAGTGCTTCGATGCCATGGCGATAAGCAGTAGGc            >  6:5742/1‑149 (MQ=255)                                                                                                                                  cccGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGcc           >  1:179323/1‑148 (MQ=255)                                                                                                                                   ccGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGa         >  6:221380/1‑149 (MQ=255)                                                                                                                                    cGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGAt        <  6:26759/149‑1 (MQ=255)                                                                                                                                        aCGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCggg    <  7:105177/149‑1 (MQ=255)                                                                                                                                          gggCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGaa  <  2:179323/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                            GGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCC‑AGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAA  >  NC_002947/2547881‑2548165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.