| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3230543 = | 47 (0.870) | 4 (0.080) | 4/256 | NT | 8.1% | coding (840/1353 nt) | PP_2830 | MFS transporter |
| ? | NC_002947 | 3230606 = | 45 (0.860) | coding (777/1353 nt) | PP_2830 | MFS transporter | |||||
CTCGGCGCCTTGGCTGACGGCTGCCGACGCCCAGGACATCGAGCGCCGCCTGGCCGCAGAGCAGGCCGCCGCACCGCAGCAGAGCAAGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3230693‑3230543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTCGGCAGCCGTCAGCCAAGGCGCCGAGGCCGGACCGTCCGGCAGCTTCTTCCACACCACATAGGCCAAGGCTACGGCGGGCAGG > NC_002947/3230606‑3230750 CTCGGCGCCTTGGCTGACGGCTGCCGACGCCCAGGACATCGAGCGCCGCCTGGCCGCAGAGCAGGCCGCCGCACCGCAGCAGAGCAAGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCAC > 1:85990/1‑148 TCGGCGCCTTGGCTGACGGCTGCCGACGCCCAGGACATCGAGCGCCGCCTGGCCGCAGAGCAGGCCGCCGCACCGCAGCAGAGCAAGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCAC > 2:316547/1‑147 AAGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCACCAGCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTCGGCAGCCGTCAGCCAAGGCG > 8:81500/1‑149 AGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCACCAGCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTC > 7:262031/1‑128 AGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCACCAGCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTC < 8:262031/128‑1 AGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCACCAGCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTCGGCAGCCGTCAGCCAAGGCGCCGAGGCCGG < 7:81500/149‑1 cgCAGCTTGCTCTGCTGCGGTGCGGCGGGCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTCGGCAGCGGTCAGCCAAGGCGCCGAGGCCGGACCGTCCGGCAGCTTCTTCCACACCACATAGGCCAAGGCTACGGCTGGCAG < 2:309529/147‑1 CCAGCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTCGGCAGCCGTCAGCCAAGGCGCCGAGGCCGGACCGTCCGGCAGCTTCTTCCACACCACATAGGCCAAGGCTACGGCGGGCAGG > 7:189744/1‑149 CTCGGCGCCTTGGCTGACGGCTGCCGACGCCCAGGACATCGAGCGCCGCCTGGCCGCAGAGCAGGCCGCCGCACCGCAGCAGAGCAAGCTGGGGCAGATGTTCCGCGACCGGCAGATCTGGCTGGCAATCGCGGTCTACTTCGTGCACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3230693‑3230543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagCTTGCTCTGCTGCGGTGCGGCGGCCTGCTCTGCGGCCAGGCGGCGCTCGATGTCCTGGGCGTCGGCAGCCGTCAGCCAAGGCGCCGAGGCCGGACCGTCCGGCAGCTTCTTCCACACCACATAGGCCAAGGCTACGGCGGGCAGG > NC_002947/3230606‑3230750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |