New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3248244 =	40 (0.740)	3 (0.060)	3/252	NT	6.7%	coding (178/318 nt)	ureB	urease subunit beta
	?	NC_002947	3248295 =	46 (0.900)					coding (229/318 nt)	ureB	urease subunit beta

GGAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3248395‑3248244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACCGCGT  >  NC_002947/3248295‑3248442                                                                                                                                                                                                                                                                                                              GGAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAG                                                                                                                                                         >  7:200638/1‑149                                                                                                GGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGC                                                          >  5:310344/1‑149                                                                                                    CGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATA                                                      >  6:155476/1‑149                                                                                                                GGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGG                                          <  6:310344/149‑1                                                                                                                                                        GCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGATATGTTCGGGCCCACTGTTGGCGACCGCGT  <  3:61057/149‑1                                                                                                                                                        GCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACCGCGT  >  5:219587/1‑149                                                                                                                                                                                                                                                                                                              GGAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3248395‑3248244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACCGCGT  >  NC_002947/3248295‑3248442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.