| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3248244 = | 40 (0.740) | 3 (0.060) | 3/252 | NT | 6.7% | coding (178/318 nt) | ureB | urease subunit beta |
| ? | NC_002947 | 3248295 = | 46 (0.900) | coding (229/318 nt) | ureB | urease subunit beta | |||||
GGGCGACATCGAGTTGAACAGTGGCCGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGC > NC_002947/3248096‑3248386 | gggCGACATCGAGTTGAACAGTGGCCGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTc < 1:57385/149‑1 (MQ=255)gggCGACATCGAGTTGAACAGTGGCCGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTc < 7:288572/149‑1 (MQ=255)acgcggtcgccaacagtgggcccgaacatgtcggcataggcctgacgggaaatatggctcatgccctgccctccagcgcgcccatcaccttgccctgaaaaccatagacctcacgcttgccggcgtaagccaccagttgcacggtacgc > 5:219587‑M1/149‑149 (MQ=255)acgcggtcgccaacagtgggcccgaacatatcggcataggcctgacgggaaatatggctcatgccctgccctccagcgcgcccatcaccttgccctgaaaaccatagacctcacgcttgccggcgtaagccaccagttgcacggtacgc < 3:61057‑M1/1‑1 (MQ=255) gCGACATCGAGTTGAACAGTGGCCGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGc < 5:207855/149‑1 (MQ=255) cGAGTTGAACAGTGGCCGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACa > 4:173536/1‑149 (MQ=255) ccGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTg > 1:194043/1‑149 (MQ=255) gAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑t < 2:194043/149‑1 (MQ=255) tCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTc > 5:344630/1‑149 (MQ=255) gCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAg > 8:200638/1‑149 (MQ=255) cctgacgggaaatatggctcatgccctgccctccagcgcgcccatcaccttgccctgaaaaccatagacctcacgcttgccggcgtaagccaccagttgcacggtacgCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGcc < 6:310344‑M1/41‑1 (MQ=255) tCAGTGTGGCCAACCATGGCGACCGGCCGGCGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCACTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCg < 7:115132/149‑1 (MQ=255) gtgtGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCt < 7:121165/109‑1 (MQ=255) gtgtGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCt > 8:121165/1‑109 (MQ=255) cAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGgcgc < 3:13650/149‑1 (MQ=255) tatggctcatgccctgccctccagcgcgcccatcaccttgccctgaaaaccatagacctcacgcttgccggcgtaagccaccagttgcacggtacgCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGcgcg > 6:155476‑M1/97‑149 (MQ=255) aaCCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGcgcg > 4:119331/1‑149 (MQ=255) ccATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTa > 6:220994/1‑149 (MQ=255) cATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTAc > 6:209997/1‑149 (MQ=255) gctcatgccctgccctccagcgcgcccatcaccttgccctgaaaaccatagacctcacgcttgccggcgtaagccaccagttgcacggtacgCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTAcc > 5:310344‑M1/93‑149 (MQ=255) tGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCg > 8:149367/1‑149 (MQ=255) cggccggTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACt > 1:22812/1‑149 (MQ=255) cggccggTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGATTACGCATGGACATCCC‑‑GGCCGGCAATGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCCCGTCCCGTGCAACt > 2:331464/1‑149 (MQ=255) ggTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACtggtgg > 2:177566/1‑149 (MQ=255) tGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCaa > 3:105464/1‑140 (MQ=255) tGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCaa < 4:105464/140‑1 (MQ=255) gCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCt > 1:157137/1‑148 (MQ=255) tCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGc > 2:318975/1‑147 (MQ=255) tACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGt > 7:268709/1‑147 (MQ=255) ccACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCCGAGGGGGGCACTGCCGGATGGCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGTCTTACGCCGGCAAGCg > 1:276389/1‑149 (MQ=255) ccACTTCTATGAAGTCAACGACGCGCGGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAg < 5:97585/148‑1 (MQ=255) tATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAg < 5:198353/141‑1 (MQ=255) tATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAg > 6:198353/1‑141 (MQ=255) tATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATgg > 2:190946/1‑149 (MQ=255) gTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGATCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCa < 1:272431/149‑1 (MQ=255) gTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCa < 2:157137/149‑1 (MQ=255) gTCAACGACGCGCTGGGGTTCGCCCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCa < 1:331464/149‑1 (MQ=255) tCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAg < 7:149367/149‑1 (MQ=255) aaCGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAggg > 1:69606/1‑149 (MQ=255) gcTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGa > 8:31180/1‑149 (MQ=255) ggTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATgg < 5:220994/149‑1 (MQ=255) gtgtTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATgg < 1:318975/148‑1 (MQ=255) tgtTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGgc < 6:344630/149‑1 (MQ=255) ttCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGgcgc > 2:71933/1‑149 (MQ=255) ggCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGagg < 2:22812/149‑1 (MQ=255) gcgcCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTGAGGGCAAGGTGATGGGCGCGCTGGaggg < 1:190946/149‑1 (MQ=255) cccACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGagggcag < 1:71933/149‑1 (MQ=255) ccACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGagggcagg < 8:268709/149‑1 (MQ=255) tGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCAt > 4:61057/1‑147 (MQ=255) ggCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGTCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTTATGGGCGCGCTGGAGGGCATGGCATGAGc < 3:173536/149‑1 (MQ=255) | GGGCGACATCGAGTTGAACAGTGGCCGGGAAACGGTCAGCGTCAGTGTGGCCAACCATGGCGACCGGCCGGTGCAGGTCGGCTCGCACTACCACTTCTATGAAGTCAACGACGCGCTGGTGTTCGACCGGGCGCCCACCCTGGGCTTTCGCCTGGACATCCC‑‑GGCCGGCACTGCCG‑‑T‑GCGCTTCGAGCCGGGTCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGC > NC_002947/3248096‑3248386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |