New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3399814	49 (0.910)	3 (0.060)	3/252	NT	6.3%	coding (220/702 nt)	PP_3005	hypothetical protein
	?	NC_002947	= 3399856	42 (0.820)					coding (178/702 nt)	PP_3005	hypothetical protein

CAGGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGCGGTGCGGGTAGCTCGTCGAGGCTGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3399710‑3399814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgTCTACCCCGCAGCCCCCTAGCCCCCGCCTGTGGCGCCGTATCCAGCGCAGCCTCGACGAGCTACCCGCACCGCGCATGCAGGCTCGCTGGTGGCAACGCCTCGGCCTGTGGCAAGGGCTCAGCGCCGCGGGGCTGGCGGCAAGCCTG  <  NC_002947/3399856‑3399710                                                                                                                                                                                                                                                              CAGGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGCGGTGCGGGTAGCTCGTCGAGGCTGCGCTGTCTACCCCGCAGCCCCCTAGCCCCCGCCTGTGGCGCCGTATCCA                                                                                                         <  2:122030/149‑1      TTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGCGGTGCGGGTAGCTCGTCGAGGCTGCGCTGTCTACCCCGCAGCCCCCTAGCCCCCGCCTGTGGCGCCGTATCCAGCG                                                                                                      >  2:35892/1‑147        GCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGCGGTGCGGGTAGCTCGTCGAGGCTGCGCTGTCTACCCCGCAGCCCCCTAGCCCCCGCCTGTGGCGCCGTATCCAGCGCA                                                                                                    <  1:35892/147‑1                                                                                                        TGTCTACCCCGCAGCCCCCTAGCCCCCGCCTGTGGCGCCGTATCCAGCCCAGCCTCGACGAGCTACCCGCACCGCGCATGCAGGCTCGCTGGTCGCAACGCCTAGGCCTGTGGCAAGGGCTCAGCGCCGCGGGGCTGGCGGCAAGCCTc  >  7:116681/1‑148                                                                                                                                                                                                                                                              CAGGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGCGGTGCGGGTAGCTCGTCGAGGCTGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3399710‑3399814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgTCTACCCCGCAGCCCCCTAGCCCCCGCCTGTGGCGCCGTATCCAGCGCAGCCTCGACGAGCTACCCGCACCGCGCATGCAGGCTCGCTGGTGGCAACGCCTCGGCCTGTGGCAAGGGCTCAGCGCCGCGGGGCTGGCGGCAAGCCTG  <  NC_002947/3399856‑3399710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.