New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3399814	49 (0.910)	3 (0.060)	3/252	NT	6.3%	coding (220/702 nt)	PP_3005	hypothetical protein
	?	NC_002947	= 3399856	42 (0.820)					coding (178/702 nt)	PP_3005	hypothetical protein

AGCAGGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCGGCGAGGCTGTCCAGTT  >  NC_002947/3399708‑3400002                                                                                                                                                      |                                                                                                                                                   agcagGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGa                                                                                                                                                    <  7:22589/149‑1 (MQ=255)   gagGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCTAGGCGTTGCGACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGGGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGAca                                                                                                                                                  >  7:116681‑M2/2‑147 (MQ=255)           ccgccAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTc                                                                                                                                          <  6:302760/149‑1 (MQ=255)                  ccccGCGGCGCTGAGCCCTTGCCAGAGGCCGTGGCGGTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCTCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGGCAGTTCca                                                                                                                                   <  1:255654/149‑1 (MQ=255)                  ccccGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCca                                                                                                                                   <  5:30234/149‑1 (MQ=255)                  ccccGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCca                                                                                                                                   <  5:25321/149‑1 (MQ=255)                  ccccGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCca                                                                                                                                   <  5:17021/149‑1 (MQ=255)                    ccGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCcag                                                                                                                                  >  4:54247/1‑148 (MQ=255)                          cgcTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCgg                                                                                                                           <  4:210261/149‑1 (MQ=255)                             tGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGcc                                                                                                                        >  1:213873/1‑149 (MQ=255)                               aGCCCTTGCCACAGGCCGAGGCATTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCt                                                                                                                       <  2:111039/148‑1 (MQ=255)                                   cTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAg                                                                                                                  <  4:32571/149‑1 (MQ=255)                                    ttGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGCGGGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCgg                                                                                                                           >  1:65831/1‑140 (MQ=255)                                    ttGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCgg                                                                                                                           <  2:65831/139‑1 (MQ=255)                                                   gCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGgcggcg                                                                                                   <  4:130436/148‑1 (MQ=255)                                                          caccaGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGTATCCACGGCGGCGCGAAgcgc                                                                                           >  3:316434/1‑149 (MQ=255)                                                          caccaGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAgcgc                                                                                           >  3:44308/1‑149 (MQ=255)                                                          caccaGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAgcgc                                                                                           >  1:204092/1‑149 (MQ=255)                                                           accaGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGcgcg                                                                                          >  3:25995/1‑149 (MQ=255)                                                              aGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCgggg                                                                                       >  3:113516/1‑149 (MQ=255)                                                                  aGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCgg                                                                                   <  7:1377/149‑1 (MQ=255)                                                                       gCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGTCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCgggg                                                                                       >  7:139925/1‑140 (MQ=255)                                                                       gCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGTCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCgggg                                                                                       <  8:139925/140‑1 (MQ=255)                                                                         aTGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAg                                                                            <  7:257711/149‑1 (MQ=255)                                                                                              gtcgAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCa                                                         >  3:22851/1‑148 (MQ=255)                                                                                              gtcgAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTACAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGTGTCGGTCCGCAGGCGTTCGGCCGTGACGGCa                                                         >  6:97273/1‑148 (MQ=255)                                                                                                      tGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGAcagcgcagcctcgacgagctacccgcaccgcgcatgcaggctcgctggtggcaacgcctcggcctgtggcaagggctcagcgccgcggggctggcggc                                                  <  1:35892‑M2/147‑99 (MQ=255)                                                                                                      tGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACg                                                            >  8:148798/1‑137 (MQ=255)                                                                                                      tGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACg                                                            <  7:148798/137‑1 (MQ=255)                                                                                                        cgcTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGAcagcgcagcctcgacgagctacccgcaccgcgcatgcaggctcgctggtggcaacgcctcggcctgtggcaagggctcagcgccgcggggctggcggcaa                                                >  2:35892‑M2/1‑47 (MQ=255)                                                                                                         gcTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCgg                                                                                   >  1:99016/1‑111 (MQ=255)                                                                                                         gcTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCgg                                                                                   <  2:99016/111‑1 (MQ=255)                                                                                                         gcTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGc                                             <  2:204092/149‑1 (MQ=255)                                                                                                           tGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGAcagcgcagcctcgacgagctacccgcaccgcgcatgcaggctcgctggtggcaacgcctcggcctgtggcaagggctcagcgccgcggggctggcggcaagcctg                                           <  2:122030‑M2/149‑106 (MQ=255)                                                                                                             gATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGAc                                          >  2:3801/1‑148 (MQ=255)                                                                                                               tACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACaa                                        <  8:118154/148‑1 (MQ=255)                                                                                                                    cgcAACAGGCGGGGGCTAGTGGGCGGCGGGGTAGACCGCGCGGTCAGTTCCAGCCGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGTCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTcc                                  <  5:97273/149‑1 (MQ=255)                                                                                                                     gcCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTccc                                 <  2:213873/149‑1 (MQ=255)                                                                                                                               ggggCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGTCATATTGATCAGGCGACAAGTTTCCAAGCACGTAt                        >  6:111570/1‑148 (MQ=255)                                                                                                                                  gCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGTAGCCGGGCCTCCCTGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGCACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTccc                    >  8:94800/1‑149 (MQ=255)                                                                                                                                   cTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTcccc                   >  3:26184/1‑149 (MQ=255)                                                                                                                                    tAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCg                  <  4:22851/149‑1 (MQ=255)                                                                                                                                     aGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCgg                 >  7:79532/1‑149 (MQ=255)                                                                                                                                        gggCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCGGCGa              <  8:79532/149‑1 (MQ=255)                                                                                                                                         ggCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGTATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCGGCGAg             <  4:316434/149‑1 (MQ=255)                                                                                                                                                gggTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCGGCGAGGCTGTcc      <  1:3801/149‑1 (MQ=255)                                                                                                                                                 ggTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTg                                                    >  6:162718/1‑102 (MQ=255)                                                                                                                                                 ggTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTg                                                    <  5:162718/102‑1 (MQ=255)                                                                                                                                                     gACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTCCGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCGGCGAGGCTGTCCAGtt  <  4:44308/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   AGCAGGCTTGCCGCCAGCCCCGCGGCGCTGAGCCCTTGCCACAGGCCGAGGCGTTGCCACCAGCGAGCCTGCATGCGC‑GGTGCGGGTAGCTCGTCGAGGCTGCGCTGGATACGGCGCCACAGGCGGGGGCTAGGGGGCTGCGGGGTAGACAGCGCGGTCAGTTCCAGCAGCCGGGCCTCCCAGGCATCCACGGCGGCGCGAAGCGCGGGGTCGGTACGCAGGCGTTCGGCCGTTACGGCATATTGCTCCGGCGACAAGGTTCCCAGCACGTATTCCCCGGCGAGGCTGTCCAGTT  >  NC_002947/3399708‑3400002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.