| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3680851 | 53 (0.980) | 8 (0.150) | 8/256 | NT | 14.6% | coding (801/894 nt) | PP_3247 | bile acid/Na+ symporter family transporter |
| ? | NC_002947 | = 3680886 | 42 (0.800) | coding (766/894 nt) | PP_3247 | bile acid/Na+ symporter family transporter | |||||
GCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3680701‑3680851‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAGCTTGATCATGTTCTTTACCGCGGCCGGGTTTGGCTGGTGGGTGAGCCGCGGGCATGTGGCGGCTGAGCCCAAGGGTGAAACCGTGAACTGATTTCACCCGATGCCCGG < NC_002947/3680886‑3680741 GCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGC < 2:270500/149‑1GCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGC > 8:188904/1‑149 AGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTG < 4:140185/149‑1 GCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGAACAACGCGACCA > 1:314051/1‑149 GCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTG > 7:162595/1‑136 GCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTG < 8:162595/136‑1 CTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGAACAACGCGACCATGGCGG > 4:182875/1‑149 CCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAACCAGTACAACGCGACCATCGCGGTGCCGGCTG > 8:155917/1‑149 ACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAATAACATGATCAAGCTGTACAACGCGACCATGGCGGTGCCGGCTGCGTTG < 7:155917/149‑1 CCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAG < 4:68564/149‑1 CCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACA < 3:182875/148‑1 CGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAGC < 7:75688/149‑1 GGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAGCT < 2:314051/149‑1 GAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAGCTTGATCATGTTCTTTACCGCGGCCGGGTTTGGCTGGTGGGTGAGCCGCGGGCATGTGGCGGCTGAGCCCAAGGGTGAAACCGTGAACTGATTTCACCCGATGCCCGG > 3:23468/1‑147 GAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAGCTTGATCATGTTCTTTACCGCGGCCGGGTTTGACTGGTGGGTGAGCCGCGGGCATGTGGCGGCTGAGCCCAAGGGTGAAACCGTGAACTGATTTCACCCGATGCCCGG > 7:36524/1‑147 GCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3680701‑3680851‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgAACAACGCGACCATGGCGGTGCCGGCTGCGTTGTACAGCTTGATCATGTTCTTTACCGCGGCCGGGTTTGGCTGGTGGGTGAGCCGCGGGCATGTGGCGGCTGAGCCCAAGGGTGAAACCGTGAACTGATTTCACCCGATGCCCGG < NC_002947/3680886‑3680741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |