New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3680851	53 (0.980)	8 (0.150)	8/256	NT	14.6%	coding (801/894 nt)	PP_3247	bile acid/Na+ symporter family transporter
	?	NC_002947	= 3680886	42 (0.800)					coding (766/894 nt)	PP_3247	bile acid/Na+ symporter family transporter

GCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACCGTCAGGCTCAGCAGGTTGAACA  >  NC_002947/3680740‑3681032                                                                                                                                                   |                                                                                                                                                    gCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCgttgtt                                                                                                                                                     >  1:68907/1‑147 (MQ=255)  ccGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGTCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTc                                                                                                                                                    >  7:36524‑M2/1‑146 (MQ=255)  ccGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTc                                                                                                                                                    >  3:23468‑M2/1‑146 (MQ=255)         tCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGaa                                                                                                                                           <  4:212850/149‑1 (MQ=255)                     aGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGc                                                                                                                               <  3:206698/148‑1 (MQ=255)                     aGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGc                                                                                                                               <  2:197959/148‑1 (MQ=255)                       ttCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAg                                                                                                                            <  5:290628/149‑1 (MQ=255)                          aCGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAggg                                                                                                                          >  8:108509/1‑148 (MQ=255)                                   cccTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCaa                                                                                                                <  7:202386/149‑1 (MQ=255)                                   cccTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCaa                                                                                                                <  7:197051/149‑1 (MQ=255)                                    ccTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGACCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAg                                                                                                               >  1:84289/1‑149 (MQ=255)                                        gggCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTc                                                                                                            <  7:108509/148‑1 (MQ=255)                                         ggCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTccc                                                                                                          <  7:55409/149‑1 (MQ=255)                                          gCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCg                                                                                                         >  4:161040/1‑149 (MQ=255)                                          gCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCg                                                                                                         >  4:327688/1‑149 (MQ=255)                                            tCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGt                                                                                                        >  4:52457/1‑148 (MQ=255)                                              aGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTa                                                                                                      <  2:143997/148‑1 (MQ=255)                                              aGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGCAAAGAACATGATCAACCTGTACAACGCAGCCCGCACCGCCATCGTCGCGTTGTTCAGCAGCGAA‑CGGCTCAACCCCAGGGCAATCGCCAAGGTCCCGTTAt                                                                                                     >  4:318305/1‑149 (MQ=255)                                                         gCCCGCGGCTCAACCACCACCCCAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAACGGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAAt                                                                                           <  1:75778/149‑1 (MQ=255)                                                            cgcgGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTcc                                                                                       <  3:161040/149‑1 (MQ=255)                                                                    acccaccAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAAt                                                                               <  6:59621/149‑1 (MQ=255)                                                                    acccaccAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAAt                                                                               <  6:64525/149‑1 (MQ=255)                                                                     cccaccAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATg                                                                              <  3:327688/149‑1 (MQ=255)                                                                     cccaccAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATg                                                                              <  7:202070/149‑1 (MQ=255)                                                                      ccaacaGACAAACCCGTCCTCGGTAAAGAACATGATCAAGCTGTACAACTCAGCCGCAACCGAAATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAAAGCAATGGCAATCGCCAATGTCCAGTTATGGATTCAAATTTCCATACCAATgg                                                                             >  8:10779/1‑149 (MQ=255)                                                                         ccaGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCaa                                                                          <  1:331505/149‑1 (MQ=255)                                                                           aGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATc                                                                        >  4:27495/1‑149 (MQ=255)                                                                                aaCCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATgg                                                                             >  4:118813/1‑139 (MQ=255)                                                                                aaCCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATgg                                                                             <  3:118813/139‑1 (MQ=255)                                                                                 aCCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTgg                                                                  <  3:52457/149‑1 (MQ=255)                                                                                   ccGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGgcg                                                                >  4:279359/1‑149 (MQ=255)                                                                                     ggCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTcc                                                                                                           >  2:100837/1‑104 (MQ=255)                                                                                           ggTAAAGAACATGATCAAGCTGTGCAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGaaa                                                        <  7:188904/149‑1 (MQ=255)                                                                                            gTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAAt                                                       <  2:182685/149‑1 (MQ=255)                                                                                            gTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAAt                                                       >  5:301309/1‑149 (MQ=255)                                                                                                aGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTc                                                   <  6:301309/149‑1 (MQ=255)                                                                                                  aaCATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCaa                                                 <  3:27495/149‑1 (MQ=255)                                                                                                  aaCATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCaa                                                 >  7:300949/1‑149 (MQ=255)                                                                                                          cAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCcgcg                                         >  1:40910/1‑149 (MQ=255)                                                                                                            aGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTcagcttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgccc                                        <  2:314051‑M2/149‑110 (MQ=255)                                                                                                             gCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTcagcttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccg                                       <  7:75688‑M2/149‑111 (MQ=255)                                                                                                              cTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTcagcttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccgg                                      <  4:68564‑M2/149‑112 (MQ=255)                                                                                                              cTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCAc                                     >  8:199045/1‑149 (MQ=255)                                                                                                               tGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTcagcttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccgg                                      <  3:182875‑M2/148‑112 (MQ=255)                                                                                                                 tACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCAccc                                   >  7:187858/1‑148 (MQ=255)                                                                                                                   cAACGCAGCCGGCACCGCCATGGTCGCGTTGTAcagcttgatcatgttatttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccggcaggt                                 <  7:155917‑M2/149‑117 (MQ=255)                                                                                                                        cAGCCGGCACCGCGATGGTCGCGTTGTActggttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccggcaggtgccgg                            >  8:155917‑M2/1‑28 (MQ=255)                                                                                                                             ggCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACCGt                      <  2:84289/149‑1 (MQ=255)                                                                                                                              gCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACCGTc                     <  8:187858/149‑1 (MQ=255)                                                                                                                                aCCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACCGTCAg                   >  8:209285/1‑149 (MQ=255)                                                                                                                                 ccGCCATGGTCGCGTTGTTcagcttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccggcaggtgccgggcgtgccag                   >  4:182875‑M2/1‑19 (MQ=255)                                                                                                                                      attgTCGAGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGTCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCTCGGCACCCAATAGCCCACCGTCAGGCTcag             <  7:10779/146‑1 (MQ=255)                                                                                                                                       tGGTCGCGTTGTTcagcttgatcatgttctttaccgcggccgggtttggctggtgggtgagccgcgggcatgtggcggctgagcccaagggtgaaaccgtgaactgatttcacccgatgcccggcaggtgccgggcgtgccagggatgc             >  1:314051‑M2/1‑13 (MQ=255)                                                                                                                                               ttgttCAGCAGCGAA‑GGGCTCATCGCCAGGGCAATCTCCAAGGTCCCTTTATGGATGCCATTTTCCATACCTATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACCGTCAGGCTCAGCAGGTTGaa    <  3:318305/149‑1 (MQ=255)                                                                                                                                                  ttCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACTGTCAGGCTCAGCAGGTTGAAca  <  7:209285/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GCCGGGCATCGGGTGAAATCAGTTCACGGTTTCACCCTTGGGCTCAGCCGCCACATGCCCGCGGCTCACCCACCAGCCAAACCCGGCCGCGGTAAAGAACATGATCAAGCTGTACAACGCAGCCGGCACCGCCATGGTCGCGTTGTTCAGCAGCGAA‑GGGCTCAACGCCAGGGCAATCGCCAAGGTCCCGTTATGGATGCCAATTTCCATACCAATGGCAATCGCCTGGCGCTTGGAAATGTTCAACAGCCGCGGCACCCAATAGCCCACCGTCAGGCTCAGCAGGTTGAACA  >  NC_002947/3680740‑3681032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.