New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4013887 =	41 (0.760)	4 (0.080)	4/246	NT	9.0%	coding (229/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	4013931 =	43 (0.860)					coding (185/519 nt)	PP_3541	MgtC family transporter

TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGC‑AGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4014042‑4013887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATC  >  NC_002947/4013931‑4014076                                                                                                                                                                                                                                                                                                                 TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGC‑AGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGAT                                                                                                                                                           >  8:159180/1‑149       GCTTGCTGATGGCTGCTGTGCTTGGCGC‑AGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAG                                                                                                                                                     <  6:202898/149‑1         TTGCTGATGGCTGCTGTGCTTGGCGCGAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG                                                                                                                                                    >  1:176233/1‑149         TTGCTGATGGCTGCTGTGCTTGGCGC‑AGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG                                                                                                                                                    >  3:269426/1‑148                                         TGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATG                                                                                                                                                          >  5:90205/1‑111                                         TGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATG                                                                                                                                                          <  6:90205/111‑1                                                                                                                GCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGC                                              >  3:145442/1‑148                                                                                                                  CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAG                                           >  6:314077/1‑149                                                                                                                   CTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGC                                          >  2:305876/1‑149                                                                                                                                   CGAGCATGGCGGGGGCCGATGAACAGGGCAGCGGCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGT                          <  5:314077/149‑1                                                                                                                                                     ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGT        <  2:242673/149‑1                                                                                                                                                      TGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTG       <  3:51998/149‑1                                                                                                                                                          CAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCAC                       >  8:67259/1‑129                                                                                                                                                          CAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCAC                       <  7:67259/129‑1                                                                                                                                                          CAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGC                                          >  6:220164/1‑110                                                                                                                                                          CAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGC                                          <  5:220164/110‑1                                                                                                                                                          CAGGGCAGCGCCCAGCGACACCAGCATGTAGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCCCCTCGCGCTCATCGGTGACAT   >  1:25060/1‑149                                                                                                                                                           AGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATC  >  4:214141/1‑149                                                                                                                                                                                                                                                                                                                 TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGC‑AGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4014042‑4013887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATC  >  NC_002947/4013931‑4014076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.