| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4078360 = | 47 (0.870) | 4 (0.080) | 4/252 | NT | 8.4% | coding (837/1281 nt) | sdaC | serine:H+ symport permease |
| ? | NC_002947 | 4078394 = | 42 (0.820) | coding (803/1281 nt) | sdaC | serine:H+ symport permease | |||||
GTTCAGCTGCGTGCTCACCCTGAGCAGCGCCCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4078396‑4078360‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACGAGAACAC > NC_002947/4078394‑4078539 GTTCAGCTGCGTGCTCACCCTGAGCAGCGCCCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTG > 1:128206/1‑135GTTCAGCTGCGTGCTCACCCTGAGCAGCGCCCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTG < 2:128206/135‑1 TTCAGCTGCGTGCTCACCCTGAGCAGCGCCCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGC > 1:127313/1‑149 CTGCGTGCTCACCCTGAGCAGCGCCCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGA < 2:127313/149‑1 AGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATC > 5:26630/1‑128 AGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATC < 6:26630/128‑1 TGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACGAGAACAC > 3:170862/1‑148 GTTCAGCTGCGTGCTCACCCTGAGCAGCGCCCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4078396‑4078360‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACGAGAACAC > NC_002947/4078394‑4078539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |