New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4078360 =	47 (0.870)	4 (0.080)	4/252	NT	8.4%	coding (837/1281 nt)	sdaC	serine:H+ symport permease
	?	NC_002947	4078394 =	42 (0.820)					coding (803/1281 nt)	sdaC	serine:H+ symport permease

GACTTGGCGATGGCCACGAAGGCGATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACGAGAACAC  >  NC_002947/4078247‑4078539                                                                                                                                                    |                                                                                                                                                  gcctttgccgtcgaccagaagcgccgttacggcgcgcacgccgacgagcgcagcggccagatcctgcgtcgtgcccacctgttgatggtggtgatggtgctgttcttcgtgttCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGaa                                                                                                                                                  >  1:127313‑M1/114‑149 (MQ=255)       gCGATGGCCACGAAGGCGATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGGTCAGGGTGAGCACGCAGCTGAACACgaa                                                                                                                                            <  1:190916/149‑1 (MQ=255)       gCGATGGCCACGAAGGCGATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACgaa                                                                                                                                            <  3:55146/149‑1 (MQ=255)           tGGCCACGAAGGCGATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAAc                                                                                                                                        <  3:316253/149‑1 (MQ=255)                cagaagcgccgttacggcgcgcacgccgacgagcgcagcggccagatcctgcgtcgtgcccacctgttgatggtggtgatggtgctgttcttcgtgttCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAac                                                                                                                                                 >  1:128206‑M1/99‑135 (MQ=255)                cagaagcgccgttacggcgcgcacgccgacgagcgcagcggccagatcctgcgtcgtgcccacctgttgatggtggtgatggtgctgttcttcgtgttCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAac                                                                                                                                                 <  2:128206‑M1/37‑1 (MQ=255)                aCGAAGGCGATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCAc                                                                                                                                   >  6:139956/1‑149 (MQ=255)                        gATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAaca                                                                                                                                                >  4:158988/1‑128 (MQ=255)                        gATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAaca                                                                                                                                                <  3:158988/128‑1 (MQ=255)                        gATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATcacca                                                                                                                           >  8:317329/1‑149 (MQ=255)                             aCGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATc                                                                                                                      <  6:69328/149‑1 (MQ=255)                                    aGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGt                                                                                                               <  5:107047/149‑1 (MQ=255)                                      cGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTgg                                                                                                             <  1:200843/149‑1 (MQ=255)                                        aaCGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAAc                                                                                                                                        >  8:13330/1‑120 (MQ=255)                                        aaCGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAAc                                                                                                                                        <  7:13330/120‑1 (MQ=255)                                        aaCGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGc                                                                                                           <  2:285686/149‑1 (MQ=255)                                          cgcgATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCac                                                                                                         >  8:106551/1‑149 (MQ=255)                                           gcgATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGc                                                                                                                                     >  6:30251/1‑120 (MQ=255)                                           gcgATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGc                                                                                                                                     <  5:30251/120‑1 (MQ=255)                                             gATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCacgac                                                                                                      >  1:21638/1‑149 (MQ=255)                                                          cTGACGGGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTTATTTTGATCACGGAGCTGAACACGAATAACATCATCTTCACCACCATTTACATGTTGGCAGGTCGCAGGATCTGGcc                                                                                         <  8:70200/149‑1 (MQ=255)                                                               gTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCAcc                                                                                                                                  >  2:173762/1‑103 (MQ=255)                                                               gTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCAcc                                                                                                                                  <  1:173762/103‑1 (MQ=255)                                                                 ggTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTgcgc                                                                                  >  8:92574/1‑149 (MQ=255)                                                                  gTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCt                                                                                 >  7:245168/1‑149 (MQ=255)                                                                     ggCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCtcgt                                                                              >  8:165365/1‑149 (MQ=255)                                                                     ggCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCtcg                                                                               <  5:139956/148‑1 (MQ=255)                                                                      gCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCtcgtc                                                                             <  7:92574/149‑1 (MQ=255)                                                                        cAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCgg                                                                           >  2:208824/1‑149 (MQ=255)                                                                         aGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGc                                                                          <  8:245168/149‑1 (MQ=255)                                                                                 cAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTgcgcgc                                                                  <  2:83003/149‑1 (MQ=255)                                                                                 cAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTgcgcgc                                                                  >  5:293330/1‑149 (MQ=255)                                                                                    gATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCg                                                                >  4:149631/1‑148 (MQ=255)                                                                                    gATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCg                                                                >  4:154691/1‑148 (MQ=255)                                                                                        gACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACg                                                           >  7:19764/1‑149 (MQ=255)                                                                                          cAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGTACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGgc                                                         >  7:298042/1‑149 (MQ=255)                                                                                                   cgcCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCt                                                   <  2:21638/146‑1 (MQ=255)                                                                                                   cgcCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGt                                                <  7:317329/149‑1 (MQ=255)                                                                                                               gttcagctgcgtgctcaccctgagcagcgcccagctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTg                                                  <  2:128206‑M2/98‑1 (MQ=255)                                                                                                               gttcagctgcgtgctcaccctgagcagcgcccagctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTg                                                  >  1:128206‑M2/38‑135 (MQ=255)                                                                                                               ggCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAg                                     <  7:106551/148‑1 (MQ=255)                                                                                                                ttcagctgcgtgctcaccctgagcagcgcccagctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGc                                   >  1:127313‑M2/37‑149 (MQ=255)                                                                                                                gCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACg                                                           <  1:313133/125‑1 (MQ=255)                                                                                                                gCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACg                                                           >  2:313133/1‑125 (MQ=255)                                                                                                                 ccAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCCTCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGcc                                  <  6:293330/149‑1 (MQ=255)                                                                                                                 ccAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGcc                                  >  5:220934/1‑149 (MQ=255)                                                                                                                     ctgcgtgctcaccctgagcagcgcccagctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCgaga                              <  2:127313‑M2/118‑1 (MQ=255)                                                                                                                                tCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGaa                   >  7:306801/1‑149 (MQ=255)                                                                                                                                tCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGaa                   >  1:260352/1‑149 (MQ=255)                                                                                                                                   gggTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATgg                <  2:102117/149‑1 (MQ=255)                                                                                                                                    ggTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGt               >  8:119124/1‑149 (MQ=255)                                                                                                                                           aCGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACga        <  1:208824/149‑1 (MQ=255)                                                                                                                                               agctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATc                         <  6:26630‑M2/123‑1 (MQ=255)                                                                                                                                               agctgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATc                         >  5:26630‑M2/6‑128 (MQ=255)                                                                                                                                                  tgAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACGAGAacac  >  3:170862‑M2/3‑148 (MQ=255)                                                                                                                                                    aaCACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACga        <  3:77473/140‑1 (MQ=255)                                                                                                                                                    aaCACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACCCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACga        >  4:77473/1‑140 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GACTTGGCGATGGCCACGAAGGCGATCAACGGCGCAGCGAACGCGATGGTCGGGTTGCTGAAGTGGTTGGCCAGGTACGACAGGATCGACAGGTTCTGCGCCTTGGCTTCGGCCAGCTGGGCGCTGCTCAGGGTGAGCACGCAGCTGAACACGAAGAACAGCACCATCACCACCATCAACAGGTGGGCACGACGCAGGATCTGGCCGCTGCGCTCGTCGGCGTGCGCGCCGTAACGGCGCTTCTGGTCGACGGCAAAGGCCGAGATGATCGGCGAATGGTTGAACGAGAACAC  >  NC_002947/4078247‑4078539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.