New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4464118 =	43 (0.800)	4 (0.080)	4/250	NT	8.8%	coding (1837/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
	?	NC_002947	4464151 =	42 (0.820)					coding (1804/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC

AGGTGAGCGTGAATGAGCGTGATGATGGGCGGGTATCTCTGGAGCTCTCCCATGCCGGTGAAGGACGTTTCCTCTACGAGGTGCGGCCACGGGCCTTCAATACGCCAAGCTTCGTCATGCGGGACACCGAAGACGGTGCCGATTCCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4464267‑4464118 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGGCGAC  >  NC_002947/4464151‑4464298                                                                                                                                                                                                                                                                                                            AGGTGAGCGTGAATGAGCGTGATGATGGGCGGGTATCTCTGGAGCTCTCCCATGCCGGTGAAGGACGTTTCCTCTACGAGGTGCGGCCACGGGCCTTCAATACGCCAAGCTTCGTCATGCGGGACACCGAAGACGGTGCCGATTCCCGC                                                                                                                                                       <  5:127680/149‑1                                                                                                                   TCATGCGGGACACCGAAGACGGTGCCGATTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCA                                                          <  3:237528/128‑1                                                                                                                   TCATGCGGGACACCGAAGACGGTGCCGATTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCA                                                          >  4:237528/1‑128                                                                                                                    CATGCGGGACACCGAAGACGGTGCCGATTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGA                                                                                >  7:79311/1‑105                                                                                                                    CATGCGGGACACCGAAGACGGTGCCGATTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGA                                                                                <  8:79311/105‑1                                                                                                                                                  CCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGG      >  3:197014/1‑149                                                                                                                                                  CCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGG      >  7:161546/1‑149                                                                                                                                                      ATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGGCGAC  <  5:285974/149‑1                                                                                                                                                                                                                                                                                                            AGGTGAGCGTGAATGAGCGTGATGATGGGCGGGTATCTCTGGAGCTCTCCCATGCCGGTGAAGGACGTTTCCTCTACGAGGTGCGGCCACGGGCCTTCAATACGCCAAGCTTCGTCATGCGGGACACCGAAGACGGTGCCGATTCCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4464267‑4464118 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGGCGAC  >  NC_002947/4464151‑4464298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.