New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4464118 =	43 (0.800)	4 (0.080)	4/250	NT	8.8%	coding (1837/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
	?	NC_002947	4464151 =	42 (0.820)					coding (1804/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC

GCAGGTGGCGTTCGTACTGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGGCGAC  >  NC_002947/4464004‑4464298                                                                                                                                                    |                                                                                                                                                    gCAGGTGGCGTTCGTACTGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCAt                                                                                                                                                     >  8:192367/1‑148 (MQ=255)  cAGGTGGCTTTCGTACTGATCCAGGATGTCGACTATCAGATCGTCACGGCTCGACCCCATGATGTGGTAGTCGTGGCCCGCTTCTCTCAGTTGCTCTTCCGCGCGGAAATACTTGCGGGATTCGGCACCGTCTTCGGTGTCCCTCATGa                                                                                                                                                   <  3:125589/149‑1 (MQ=255)          gTTCGTACTGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCtt                                                                                                                                           <  5:184137/149‑1 (MQ=255)               tACTGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGt                                                                                                                                      >  7:243712/1‑149 (MQ=255)               tACTGATCAAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCg                                                                                                                                       >  5:317983/1‑148 (MQ=255)                  tGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCGGCAGGACGACGCTTGGCGTAtt                                                                                                                                   >  6:104034/1‑149 (MQ=255)                  tGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTAtt                                                                                                                                   >  1:14191/1‑149 (MQ=255)                     tCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGaa                                                                                                                                <  6:144475/149‑1 (MQ=255)                     tCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGaa                                                                                                                                <  3:120926/149‑1 (MQ=255)                       tgggcgggtatctctggagctctcccatgccggtgaaggacgtttcctctacgaggtgcggccacgggccttcaatacgccaagcttcgtcaTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGa                                                                                                                                                   >  4:237528‑M1/93‑128 (MQ=255)                       tgggcgggtatctctggagctctcccatgccggtgaaggacgtttcctctacgaggtgcggccacgggccttcaatacgccaagcttcgtcaTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGa                                                                                                                                                   <  3:237528‑M1/36‑1 (MQ=255)                       cAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGc                                                                                                                                        >  4:192016/1‑139 (MQ=255)                       cAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGc                                                                                                                                        <  3:192016/139‑1 (MQ=255)                        aGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCACATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGAGTCCCGCATGACGAAGCTTGGCGTATTGAAGGc                                                                                                                             >  2:324635/1‑149 (MQ=255)                                          tCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTa                                                                                                           <  7:192367/149‑1 (MQ=255)                                           cctCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTag                                                                                                          <  4:254592/147‑1 (MQ=255)                                             tcccatgccggtgaaggacgtttcctctacgaggtgcggccacgggccttcaatacgccaagcttcgtcaTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATg                                                                                                                                                    >  7:79311‑M1/71‑105 (MQ=255)                                             tcccatgccggtgaaggacgtttcctctacgaggtgcggccacgggccttcaatacgccaagcttcgtcaTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATg                                                                                                                                                    <  8:79311‑M1/35‑1 (MQ=255)                                               aCGGCTCCACCCCATGATGTCGTAGTCCTGGCACCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGTCACCGTCTTCGTTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAgg                                                                                                       <  5:204976/148‑1 (MQ=255)                                                  gCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAAc                                                                                                   <  2:27919/149‑1 (MQ=255)                                                            atgatgTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCAcc                                                                                         >  1:56751/1‑149 (MQ=255)                                                               atgTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCCCGCAAATACTTGCCGGAATCGGCACCGTCATCGGTGTCCCGCAAGACGAAGATTCGAGTATTGAAGGCCCGTGCCCGCACCTCGTAGAGGAAACGTCCATCACCgg                                                                                       >  6:285974/1‑148 (MQ=255)                                                                   cGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATgg                                                                                  >  5:328620/1‑149 (MQ=255)                                                                    gTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCACGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATgg                                                                                  >  7:115516/1‑148 (MQ=255)                                                                     tAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGTGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGga                                                                                <  6:317983/149‑1 (MQ=255)                                                                     tAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATgg                                                                                  >  3:201732/1‑147 (MQ=255)                                                                     tAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGga                                                                                <  3:87740/149‑1 (MQ=255)                                                                       gTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGgaga                                                                              <  7:161151/149‑1 (MQ=255)                                                                       gTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGgag                                                                               <  2:14191/148‑1 (MQ=255)                                                                        tCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGagag                                                                             >  4:166103/1‑149 (MQ=255)                                                                         ccTGGCCCCCTTCTCGCACATGCACTTCAGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGCCGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCGTCACCGGCATGGGagag                                                                             >  2:153024/1‑148 (MQ=255)                                                                               ccccTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCaga                                                                      <  2:56751/149‑1 (MQ=255)                                                                                      tcGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATAccc                                                               >  2:51603/1‑149 (MQ=255)                                                                                        tcAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATAccc                                                               <  5:167474/146‑1 (MQ=255)                                                                                        gCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTTGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGc                                                             >  7:249570/1‑149 (MQ=255)                                                                                        gCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGc                                                             >  1:312143/1‑149 (MQ=255)                                                                                          aGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGccc                                                           <  8:243712/149‑1 (MQ=255)                                                                                              gCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATgg                                                                                  <  8:183100/122‑1 (MQ=255)                                                                                              gCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATgg                                                                                  >  7:183100/1‑122 (MQ=255)                                                                                                           gAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCa                                          >  6:212539/1‑149 (MQ=255)                                                                                                                tcatgcgggacaccgaagacggtgccgattcccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCca                                                          >  4:237528‑M2/37‑128 (MQ=255)                                                                                                                tcatgcgggacaccgaagacggtgccgattcccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCca                                                          <  3:237528‑M2/92‑1 (MQ=255)                                                                                                                aCTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGcc                                                            <  5:68903/126‑1 (MQ=255)                                                                                                                aCTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGcc                                                            >  6:68903/1‑126 (MQ=255)                                                                                                                 catgcgggacaccgaagacggtgccgattcccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGga                                                                                <  8:79311‑M2/70‑1 (MQ=255)                                                                                                                 catgcgggacaccgaagacggtgccgattcccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGga                                                                                >  7:79311‑M2/36‑105 (MQ=255)                                                                                                                  ttGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCGTCACCGGCATGGGAGAGCTGCAGAGATACCCGCCCATCATCCCGCTCATTCACGCTCAc                                   >  2:279316/1‑149 (MQ=255)                                                                                                                    GCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCt                                 <  5:127680‑M1/149‑1 (MQ=255)                                                                                                                           tCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGcc                          <  1:51603/149‑1 (MQ=255)                                                                                                                               cACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCGATCATCACGCTCATTCACGCTCACCTCGTAGCcttgc                      <  3:166103/149‑1 (MQ=255)                                                                                                                               cACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCcttgc                      <  4:201732/149‑1 (MQ=255)                                                                                                                                     cTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTgcg                 >  6:326523/1‑148 (MQ=255)                                                                                                                                     cTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTgcg                 <  5:326523/148‑1 (MQ=255)                                                                                                                                        cGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTgcgc                <  2:312143/146‑1 (MQ=255)                                                                                                                                               ccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTggg      >  7:161546‑M2/6‑149 (MQ=255)                                                                                                                                               ccgcaTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTggg      >  3:197014‑M2/6‑149 (MQ=255)                                                                                                                                                   aTGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGGCGAc  <  5:285974‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCAGGTGGCGTTCGTACTGATCCAGGATGTCGCCAATCACATCGTCACGGCTCCACCCCATGATGTCGTAGTCCTGGCCCCCTTCTCGCAGATGCACTTCCGCGCGGAAATACTTGCGGGAATCGGCACCGTCTTCGGTGTCCCGCATGACGAAGCTTGGCGTATTGAAGGCCCGTGGCCGCACCTCGTAGAGGAAACGTCCTTCACCGGCATGGGAGAGCTCCAGAGATACCCGCCCATCATCACGCTCATTCACGCTCACCTCGTAGCCTTGCTTGCGCAGTTCCTGGGCGAC  >  NC_002947/4464004‑4464298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.