| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4933522 = | 79 (1.470) | 4 (0.080) | 4/246 | NT | 5.9% | coding (927/1308 nt) | flhF | flagellar biosynthesis protein FlhF |
| ? | NC_002947 | 4933601 = | 54 (1.080) | coding (848/1308 nt) | flhF | flagellar biosynthesis protein FlhF | |||||
GTATCGGCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933676‑4933522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTT > NC_002947/4933601‑4933746 GTATCGGCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGC > 5:273550/1‑148 TATCGGCGCGCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGC > 5:57333/1‑147 ATCGGCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAG > 4:166867/1‑149 GTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACT‑‑‑‑‑‑‑‑‑‑‑‑GCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGC > 2:24485/1‑149 TCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCC > 5:84484/1‑149 GCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGA > 3:163674/1‑149 CACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTC < 6:84484/149‑1 GACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTT > 7:236503/1‑149 GTATCGGCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933676‑4933522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTT > NC_002947/4933601‑4933746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |