New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4955816	49 (0.910)	3 (0.060)	3/248	NT	5.7%	coding (939/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955847	53 (1.050)					coding (908/1374 nt)	fliI	flagellum‑specific ATP synthase

GGGTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955667‑4955816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgccaAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAACCTGGCGGTGGTTCGATCACTGCGTTCTATACCGTGCTGTCTGAAGGCGACGATCAGCAAGACCCGATCGCCGACTCGGCGCGGGGCGTGCTTGACGGCCACTTTGTACT  <  NC_002947/4955847‑4955700                                                                                                                                                                                                                                                                                                             GGGTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCC                                                                                                                                                       <  6:25829/149‑1   GTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGCAACGCCCCGCGCCCAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCCCGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCA                                                                                                                                                      >  1:84347/1‑149                                         AGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAAC                                                                                                               <  6:129829/149‑1                                                                            GATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGG                                                                                                                    <  5:14826/110‑1                                                                            GATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGG                                                                                                                    >  6:14826/1‑110                                                                                                                                                    GCCAAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAACCTGGCGGTGGTTCGATCACTGCGTTCTATACCGTGCTGTCTGAAGGCGATGATCAGCAAGACCCGATCGCCGACTCGGCGCGGGGCGTGCTTGACGGCCACTTTG      >  8:84040/1‑148                                                                                                                                                       AAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAACCTGGCGGTGGTTCGATCACTGCGTTCTATACCGTGCTGTCTGAAGGCGACGATCAGCAAGACCCGATCGCCGACTCGGCGCGGGGCGTGCTTGACGGCCACTTTGTACT  <  8:137160/149‑1                                                                                                                                                                                                                                                                                                             GGGTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955667‑4955816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgccaAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAACCTGGCGGTGGTTCGATCACTGCGTTCTATACCGTGCTGTCTGAAGGCGACGATCAGCAAGACCCGATCGCCGACTCGGCGCGGGGCGTGCTTGACGGCCACTTTGTACT  <  NC_002947/4955847‑4955700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.