New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4955816	49 (0.910)	3 (0.060)	3/248	NT	5.7%	coding (939/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955847	53 (1.050)					coding (908/1374 nt)	fliI	flagellum‑specific ATP synthase

GTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAGCAACAGCACATTC  >  NC_002947/4955669‑4955963                                                                                                                                                     |                                                                                                                                                     gTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGCAACGCCCCGCGCCCAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCCCGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCA                                                                                                                                                      >  1:84347‑M1/1‑149 (MQ=255)  tAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAtt                                                                                                                                                    <  6:68647/149‑1 (MQ=255)     tGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATtgcc                                                                                                                                                 >  6:222125/1‑149 (MQ=255)              tCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTc                                                                                                                                        >  8:134034/1‑149 (MQ=255)              tCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTc                                                                                                                                        >  7:80225/1‑149 (MQ=255)                 gccagccGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTccac                                                                                                                                     <  7:134034/149‑1 (MQ=255)                           gcgACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGc                                                                                                                           <  1:327841/149‑1 (MQ=255)                             gACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAg                                                                                                                         >  5:223895/1‑149 (MQ=255)                                aGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTt                                                                                                                      <  8:137160‑M2/149‑2 (MQ=255)                                    cAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCATCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTtggc                                                                                                                   >  8:84040‑M2/1‑144 (MQ=255)                                       aGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAagctgcccaagctggtggagcgggcaggcaatggcgaac                                                                                                               <  6:129829‑M1/149‑40 (MQ=255)                                        gTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑Aaca                                                                                                             <  4:19803/149‑1 (MQ=255)                                            ccGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACAcc                                                                                                           >  2:104759/1‑147 (MQ=255)                                            ccGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGa                                                                                                         <  1:104759/149‑1 (MQ=255)                                              gTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAgg                                                                                                       <  7:137160/149‑1 (MQ=255)                                                  aGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCgg                                                                                                   <  5:222125/149‑1 (MQ=255)                                                   gC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAg                                                                                                        <  4:285756/143‑1 (MQ=255)                                                   gC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAg                                                                                                        >  3:285756/1‑143 (MQ=255)                                                   gC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCggg                                                                                                  >  6:43483/1‑149 (MQ=255)                                                       cGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTa                                                                                                <  2:191575/148‑1 (MQ=255)                                                       cGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTa                                                                                                >  1:191575/1‑148 (MQ=255)                                                          cccGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAAccc                                                                                            >  3:283946/1‑149 (MQ=255)                                                                  gAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTAAGACAGCCCGGTATAGCACGCAGTGATAGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCCCCAGATTGCGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGtggc                                                                                    >  6:17496/1‑149 (MQ=255)                                                                        gCGATCGGCTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTggcgg                                                                              >  4:197073/1‑149 (MQ=255)                                                                          gATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAagctgcccaagctggtggagcgggcaggcaatgg                                                                                                                    >  6:14826‑M1/1‑76 (MQ=255)                                                                          gATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCAagctgcccaagctggtggagcgggcaggcaatgg                                                                                                                    <  5:14826‑M1/110‑35 (MQ=255)                                                                          gATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCt                                                                            >  5:161855/1‑149 (MQ=255)                                                                          gATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCt                                                                            <  5:17496/149‑1 (MQ=255)                                                                                   ttGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATgg                                                                   >  6:24795/1‑149 (MQ=255)                                                                                     gCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGc                                                                  >  7:70772/1‑148 (MQ=255)                                                                                      cTGATCGTCGCCTTCAGTCAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGGCCGCTCCACCAGCTTGGGCAGCTTGGCGCTACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGc                                                                  <  1:75027/148‑1 (MQ=255)                                                                                        gATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAgg                                                              >  1:298715/1‑149 (MQ=255)                                                                                        gATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAgg                                                              >  3:182977/1‑149 (MQ=255)                                                                                          tcgtcgCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGc                                                            <  4:283946/149‑1 (MQ=255)                                                                                           cgtcgCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGc                                                            >  2:216161/1‑148 (MQ=255)                                                                                            gtcgCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCaa                                                          >  1:119422/1‑149 (MQ=255)                                                                                               gCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAAttt                                                       >  8:1798/1‑149 (MQ=255)                                                                                               gCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAAttt                                                       >  4:112380/1‑149 (MQ=255)                                                                                                  ttCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTccc                                                    >  2:188762/1‑149 (MQ=255)                                                                                                    cAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCg                                                   <  6:49705/148‑1 (MQ=255)                                                                                                    cAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGc                                                  >  3:68749/1‑149 (MQ=255)                                                                                                       aCAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGctgg                                               <  8:231303/149‑1 (MQ=255)                                                                                                         aGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGctgggc                                             <  8:70772/149‑1 (MQ=255)                                                                                                           cACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGctgggcct                                           <  3:112380/149‑1 (MQ=255)                                                                                                             cGGTATAGAACGCAGTGAGCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGctgggcctgg                                         <  4:253141/149‑1 (MQ=255)                                                                                                                   aGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGaaa                                   >  2:246438/1‑149 (MQ=255)                                                                                                                      aCGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACgg                                <  6:223895/149‑1 (MQ=255)                                                                                                                       cGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGctgggc                                             <  4:147760/135‑1 (MQ=255)                                                                                                                       cGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGctgggc                                             >  3:147760/1‑135 (MQ=255)                                                                                                                         cAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTc                             <  8:80225/149‑1 (MQ=255)                                                                                                                           gTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCaa                           <  1:216161/149‑1 (MQ=255)                                                                                                                            tGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAAc                          <  2:298715/149‑1 (MQ=255)                                                                                                                            tGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAAc                          <  5:43483/149‑1 (MQ=255)                                                                                                                            tGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAAc                          <  3:197073/149‑1 (MQ=255)                                                                                                                                  aaCCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTcc                    <  1:246438/149‑1 (MQ=255)                                                                                                                                   accaccGCCAGGTTCGCCATTGCCTGCCCGCTCGACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCa                   <  2:84347/149‑1 (MQ=255)                                                                                                                                        cGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAg               >  4:202818/1‑148 (MQ=255)                                                                                                                                              gTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTtggcgaacctggcggtggttcgatcactgcgttctataccgtgctgtctgaaggcgacgatcagcaagacccgatcgccgactcggcgcggggcgtgcttgacggccact         <  6:129829‑M2/149‑111 (MQ=255)                                                                                                                                                  gCCAagctgcccaagctggtggagcgggcaggcaatggcgaacctggcggtggttcgatcactgcgttctataccgtgctgtctgaaggcgatgatcagcaagacccgatcgccgactcggcgcggggcgtgcttgacggccactttg      >  8:84040‑M1/1‑4 (MQ=255)                                                                                                                                                   ccATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTtggcgaacctggcggtggttcgatcactgcgttctataccgtgctgtctgaaggcgacgatcagcaagacccgatc                                           >  6:14826‑M2/1‑34 (MQ=255)                                                                                                                                                   ccATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTtggcgaacctggcggtggttcgatcactgcgttctataccgtgctgtctgaaggcgacgatcagcaagacccgatc                                           <  5:14826‑M2/110‑77 (MQ=255)                                                                                                                                                     aagctgcccaagctggtggagcgggcaggcaatggcgaacctggcggtggttcgatcactgcgttctataccgtgctgtctgaaggcgacgatcagcaagacccgatcgccgactcggcgcggggcgtgcttgacggccactttgtact  <  8:137160‑M1/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTAATGGCCTTCCTCAGCCAGCCGACGCGACAGTACAAAGTGGCCGTCAAGC‑ACGCCCCGCGCCGAGTCGGCGATCGGGTCTTGCTGATCGTCGCCTTCAGACAGCACGGTATAGAACGCAGTGATCGAACCACCGCCAGGTTCGCCATTGCCTGCCCGCTCCACCAGCTTGGGCAGCTTGGCG‑AACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAGCAACAGCACATTC  >  NC_002947/4955669‑4955963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.