New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5274000 =	47 (0.870)	4 (0.080)	4/238	NT	10.6%	intergenic (+22/+84)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	5274073 =	25 (0.520)					intergenic (+95/+11)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein

AGCGTCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5274158‑5274000 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAA  >  NC_002947/5274073‑5274219                                                                                                                                                                                                                                                                                                                    AGCGTCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGG                                                                                                                                                                <  2:229371/148‑1     TCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAG                                                                                                                                                           >  1:69426/1‑149         AGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTTGCCCCGCAGCACGCAAACCGCTAAAAGGCCCAGGCGTTGGCGGTGTTAGCGGGCAAACCCG                                                                                                                                                       >  8:7474/1‑149          gctCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGC                                                                                                                                                      <  3:194188/146‑1                                                                                            GCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGC                                                                     >  4:101090/1‑148                                                                                               TGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACG                                                                 >  5:181741/1‑149                                                                                                                 CGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGA                                                    >  1:124840/1‑144                                                                                                                 CGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGA                                                    <  2:124840/144‑1                                                                                                                                                     GCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGACCCCATGAACAGCCGCATCACACAGGCCGCCCCACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACGGCGGTTTCTTG           >  2:164395/1‑149                                                                                                                                                        AGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCT        <  7:20346/149‑1                                                                                                                                                         GCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTT       >  6:81710/1‑149                                                                                                                                                           CCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCC     <  2:179919/149‑1                                                                                                                                                              CTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCTCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAA  <  1:229371/149‑1                                                                                                                                                              CTGCCGCGCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAA  <  6:181741/149‑1                                                                                                                                                                                                                                                                                                                    AGCGTCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5274158‑5274000 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAA  >  NC_002947/5274073‑5274219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.