New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5274000 =	47 (0.870)	4 (0.080)	4/238	NT	10.6%	intergenic (+22/+84)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	5274073 =	25 (0.520)					intergenic (+95/+11)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein

GTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAA  >  NC_002947/5273934‑5274219                                                                                                                                             |                                                                                                                                                   gTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCtt                                                                                                                                            >  3:326535/1‑148 (MQ=255)       gcATCGCCCATGTTCGTAATTGTTAACGCCGGCACGTGGGCGCGCCTCCGCCCG‑GGTTGGAGCGGGCTGGCCGGCTAACACCGGAAACGCCTGGGCCTTCTCGGGCTTTGCGGGCTTGGGGGCCATGCCCGCTGCCGCTCTTTATCAgt                                                                                                                                     <  6:242333/149‑1 (MQ=255)       gcAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAgt                                                                                                                                     >  3:67703/1‑149 (MQ=255)            gCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGtgtgtg                                                                                                                                >  1:270948/1‑149 (MQ=255)            gCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGtgtgtg                                                                                                                                >  7:7474/1‑149 (MQ=255)              ccAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGt                                                                                                                              >  1:302750/1‑149 (MQ=255)                aaGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGt                                                                                                                              >  2:118647/1‑147 (MQ=255)                      gTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCccg                                                                                                                      >  7:194034/1‑149 (MQ=255)                       tCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCccgc                                                                                                                     >  2:69426/1‑149 (MQ=255)                          ttCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCCTCGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCccgccg                                                                                                                   >  1:221978/1‑149 (MQ=255)                                aaGCCCGAATTTTGGCGCGCCACCGCCCC‑GTTAGTAGGGGGATTGCCCGCGAACACCGGCAACGCCTGTGCAATCTCGCGCGTTGCCTGCTTGGTGGGAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCAt                                                                                                            <  4:67703/149‑1 (MQ=255)                                                      ccGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCAAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGaa                                                                                                         >  1:260209/1‑130 (MQ=255)                                                          ccc‑cGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCca                                                                                  >  7:78487/1‑149 (MQ=255)                                                            c‑cGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCcaca                                                                                >  7:28706/1‑149 (MQ=255)                                                                     GCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACccagagc                                                                        <  3:194188‑M1/149‑4 (MQ=255)                                                                      CGGGTTTGCCCGCTAACACCGCCAACGCCTGGGCCTTTTAGCGGTTTGCGTGCTGCGGGGCAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCt                                                                       >  8:7474‑M1/1‑149 (MQ=255)                                                                       gggCTTGCCCTCTAACACGGCAAAGGCCTGTGCATTCTCGGGCTTTGCGTGTTTGGTGGCAAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTg                                                                      <  4:326535/149‑1 (MQ=255)                                                                         gcttgcccacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGc                                                                     >  4:101090‑M2/69‑148 (MQ=255)                                                                          CTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGa                                                                   >  1:69426‑M1/1‑149 (MQ=255)                                                                            tgcccacgaagcaggcaacgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACg                                                                 >  5:181741‑M2/66‑149 (MQ=255)                                                                              cccGCCATCCCCGCCACCGCGGGTCCCATCTAGCGCGTGGCGGGCTGCGTGGCAACGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGc                                                                <  1:118647/148‑1 (MQ=255)                                                                               CCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCt                                                               <  2:229371‑M1/148‑1 (MQ=255)                                                                                  cgAACACCGGAACCGCCTGTGCCATCTAGCGCGTTGCGTGCTTCGTGGTCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATc                                                           <  8:78487/149‑1 (MQ=255)                                                                                       acCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGcc                                                        >  1:341255/1‑147 (MQ=255)                                                                                         cGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGcc                                                        >  1:179919/1‑145 (MQ=255)                                                                                            cAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCa                                                 <  7:151121/149‑1 (MQ=255)                                                                                              cgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGa                                                    <  2:124840‑M2/97‑1 (MQ=255)                                                                                              cgcgctagatggcacaggcgttgccggtgttcgcgggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGa                                                    >  1:124840‑M2/48‑144 (MQ=255)                                                                                                gCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATcaca                                                                                            <  5:194424/102‑1 (MQ=255)                                                                                                gCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATcaca                                                                                            >  6:194424/1‑102 (MQ=255)                                                                                                  cTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCaa                                             >  1:179635/1‑147 (MQ=255)                                                                                                     tgCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAg                                          <  2:221978/147‑1 (MQ=255)                                                                                                                     gCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGCTCAGCAACAGCCAACCCAGTCGCTGCca                        >  8:20346/1‑149 (MQ=255)                                                                                                                                  gcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGACCCCATGAACAGCCGCATCACACAGGCCGCCCCACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACGGCGGTTTCTTg           >  2:164395‑M2/12‑149 (MQ=255)                                                                                                                                     agcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCt        <  7:20346‑M2/141‑1 (MQ=255)                                                                                                                                      gcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCtt       >  6:81710‑M2/8‑149 (MQ=255)                                                                                                                                        ccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTcc     <  2:179919‑M2/144‑1 (MQ=255)                                                                                                                                           ctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCTCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCaaa  <  1:229371‑M2/147‑1 (MQ=255)                                                                                                                                           ctGCCGCGCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCaaa  <  6:181741‑M2/147‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   GTGGCGGCAACGCCCAAGTTCGTCATTCTGAAAGCCCGCAAGTAGGCGCGCCACCGCCCC‑CGTAGGAGCGGGCTTGCCCGCGAACACCGGCAACGCCTGTGCCATCTAGCGCGTTGCCTGCTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAA  >  NC_002947/5273934‑5274219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.