New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5565274	63 (1.170)	3 (0.060)	3/254	NT	5.1%	coding (312/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565366	50 (0.970)					coding (220/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA

TACGTGCCGCGGACTCCGGGTCGACTTCGGCCAACTGGCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5565123‑5565274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcTATTCCGCCGCGCAGTTCCGTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAAG  <  NC_002947/5565366‑5565262                                                                                                                                                                                                                                                                   TACGTGCCGCGGACTCCGGGTCGACTTCGGCCAACTGGCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAG                                                                                                              <  8:104247/149‑1    GTGCCGCGGACTCCGGGTCGACTTCGGCCAACTGGCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAG                                                                                                            >  8:38558/1‑148                                                                                                    CATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCTATTCCGCCGCGCAGTTCCGTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTC           >  5:148966/1‑149                                                                                                            GCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCTATTCCGCCGCGCAGTTCCGTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAA   <  6:148966/149‑1                                                                                                             CCGGCATGGCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCTATTCCGCCGCGCAGTTCCGTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAAG  <  6:209074/149‑1                                                                                                                                                                                                                                                                   TACGTGCCGCGGACTCCGGGTCGACTTCGGCCAACTGGCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5565123‑5565274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcTATTCCGCCGCGCAGTTCCGTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAAG  <  NC_002947/5565366‑5565262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.