New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5565274	63 (1.170)	3 (0.060)	3/254	NT	5.1%	coding (312/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565366	50 (0.970)					coding (220/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA

CGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGTTCACACGGCAGCACTGTGG  >  NC_002947/5565225‑5565509                                                                                                                                               |                                                                                                                                                gcctggccgacATGCCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTgg                                                                                                                                          >  7:13424/5‑149 (MQ=255)  ggcggcCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGACACGGAACTGCGCGGCGGAATAGCTCTgg                                                                                                                                          <  7:38558/148‑1 (MQ=255)       ccggcATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCggg                                                                                                                                    <  4:265974/149‑1 (MQ=255)        cggcATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGt                                                                                                                                   >  3:62050/1‑149 (MQ=255)           cATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCga                                                                                                                                <  8:68340/149‑1 (MQ=255)           cATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCga                                                                                                                                <  3:25982/149‑1 (MQ=255)               tCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAAt                                                                                                                            <  4:272208/149‑1 (MQ=255)                 ggccaggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGt                                                                                                                          <  1:252913/149‑1 (MQ=255)                   ccaggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCg                                                                                                                        <  5:42701/149‑1 (MQ=255)                    caggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCg                                                                                                                        <  1:267662/149‑1 (MQ=255)                     aggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                                                                                      <  8:247825/149‑1 (MQ=255)                             gATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGt                                                                                                              <  3:226604/149‑1 (MQ=255)                                 aaCGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCgg                                                                                                          >  5:65508/1‑149 (MQ=255)                                  aCGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCAGCGCGCGGTGATCTCTGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTgg                                                                                                                                          >  3:300555/1‑116 (MQ=255)                                  aCGACTTGTAATAGAGCATGGTGCCGCCGACCAACAGAGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGGGTCGGCACGGAACTGCGCGGCGGAATAGCTCTgg                                                                                                                                          <  4:300555/116‑1 (MQ=255)                                     ccTTGTAATTGAGGATGGTGCCGGCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTgg                                                                                                      <  7:295611/149‑1 (MQ=255)                                      cTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAgctctattacaaggcgttgatcgatggcctggccgccatgccgg                                                                                                     <  6:209074‑M2/149‑45 (MQ=255)                                      cTTGTAATAGAGCATGGTCCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGGCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGGCGAGAATGGCGATCAGCCGGTGCGGGTggt                                                                                                     >  6:320415/1‑148 (MQ=255)                                       ttGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAgctctattacaaggcgttgatcgatggcctggccgacatgccggc                                                                                                    <  6:148966‑M2/149‑46 (MQ=255)                                        tGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTggg                                                                                                     >  4:135391/1‑147 (MQ=255)                                             tAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCAGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAg                                                                                              >  8:32359/1‑149 (MQ=255)                                               gagCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatg                                                                                            >  5:148966‑M2/1‑96 (MQ=255)                                               gagCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGa                                                                                            <  6:132649/149‑1 (MQ=255)                                                          cgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAc                                                                                           <  6:310315/139‑1 (MQ=255)                                                          cgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAc                                                                                           >  5:310315/1‑139 (MQ=255)                                                          cgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGAc                                                                                 >  7:98724/1‑149 (MQ=255)                                                          cgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGAc                                                                                 >  6:114668/1‑149 (MQ=255)                                                            cagACCAACAGCGGGATCTTGCCGCGCGCTGTGATCTCGGCCATCGCC‑TCCAGCGAGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGCGCCGGGTCGACAATGTAGATCAGCCGGTGCGGGTGGGCAGCGATGACTTCTTTACACgg                                                                               >  6:315528/3‑149 (MQ=255)                                                              gACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCt                                                                             >  5:193848/1‑149 (MQ=255)                                                                ccAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTg                                                                           <  4:62050/149‑1 (MQ=255)                                                                   aCAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGcc                                                                        >  4:68814/1‑149 (MQ=255)                                                                      gCGGGATCTTGCCGCGCGCGGTGAGCTCGGCCCTGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGGCGAGACTGTCGAGCAGCCGGTGCGGGGGGCCAGCGAGGACTTCTTTCGACGGCTTGGCCGaa                                                                     <  5:320415/149‑1 (MQ=255)                                                                       cGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAAc                                                                    >  1:183093/1‑149 (MQ=255)                                                                       cGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAAc                                                                    >  6:221086/1‑149 (MQ=255)                                                                                gCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATc                                                             <  7:259520/147‑1 (MQ=255)                                                                                          gtgtTCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTa                                                 <  2:264887/149‑1 (MQ=255)                                                                                           tGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACgg                                                   >  7:154245/1‑146 (MQ=255)                                                                                            gATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGACCCGATATCCATGCCACGGTAGa                                               >  5:67266/1‑149 (MQ=255)                                                                                                tcGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCa                                                      <  8:5426/138‑1 (MQ=255)                                                                                                tcGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCa                                                      >  7:5426/1‑138 (MQ=255)                                                                                                 cGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTg                                                                                                       >  1:140794/1‑88 (MQ=255)                                                                                                 cGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTg                                                                                                       <  2:140794/88‑1 (MQ=255)                                                                                                    ccATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGcc                                       >  1:311786/1‑149 (MQ=255)                                                                                                    ccATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGcc                                       >  1:90642/1‑149 (MQ=255)                                                                                                         gCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATc                                  <  5:342067/149‑1 (MQ=255)                                                                                                         gCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATc                                  <  5:114668/149‑1 (MQ=255)                                                                                                           c‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAct                                                                                          <  7:284906/91‑1 (MQ=255)                                                                                                           c‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAct                                                                                          >  8:284906/1‑91 (MQ=255)                                                                                                               cAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGAc                               <  5:221086/147‑1 (MQ=255)                                                                                                                     gTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCa                       <  2:121983/149‑1 (MQ=255)                                                                                                                        ggCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGtt                    <  3:68814/149‑1 (MQ=255)                                                                                                                        ggCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGtt                    <  8:154245/149‑1 (MQ=255)                                                                                                                         gCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGtt                    >  4:28967/1‑148 (MQ=255)                                                                                                                           aCGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGCATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGCCGCTGATCAGTTca                  >  2:268828/1‑148 (MQ=255)                                                                                                                                    cgcgGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGTTCACACGgcag          <  6:193848/147‑1 (MQ=255)                                                                                                                                         cggAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGTTCACACGGCAGCACtgtg   <  7:32359/149‑1 (MQ=255)                                                                                                                                          ggAATAGCTCTGGGCCGGGACGAGAATGTCGATCAGCCGCTGCGGGTGGGCAGCGAGGACTTCTTTCGACGCCTTGGCCGAACCGAGATCCAACCCACGGTAGACAAGAGCCGATTCAACGCTGATCAGTACACACGGCAGCACTGTgg  >  2:55293/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                CGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCC‑TCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAATCGACGCTGATCAGTTCACACGGCAGCACTGTGG  >  NC_002947/5565225‑5565509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.