New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5754738	56 (1.040)	4 (0.080)	4/256	NT	6.8%	coding (934/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
	?	NC_002947	= 5754774	55 (1.050)					coding (970/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG

GTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5754598‑5754738 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCG  <  NC_002947/5754774‑5754627                                                                                                                                                                                                                                                                                                   GTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCC                                                                                                                                              >  8:274708/1‑149                                  AGTTCACCATCGGCCACGTGCGTCACCGCCTGGGAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATG                                                                                                             <  7:274708/149‑1                                         CATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCAT                                                                                                              >  7:129452/1‑141                                         CATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCAT                                                                                                              <  8:129452/141‑1                                                                                                                                            GGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGC   >  8:139470/1‑149                                                                                                                                            GGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTC                                                                                            >  1:94237/1‑60                                                                                                                                            GGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTC                                                                                            <  2:94237/60‑1                                                                                                                                             GCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCG  >  4:163603/1‑149                                                                                                                                                                                                                                                                                                   GTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5754598‑5754738 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCG  <  NC_002947/5754774‑5754627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.