New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5754738	56 (1.040)	4 (0.080)	4/256	NT	6.8%	coding (934/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
	?	NC_002947	= 5754774	55 (1.050)					coding (970/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG

CGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTATGGATCGTCGACGAT  >  NC_002947/5754627‑5754922                                                                                                                                                       |                                                                                                                                                      cgcCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGc                                                                                                                                                      >  4:163603‑M2/1‑148 (MQ=255)  gcCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGcc                                                                                                                                                     >  8:139470‑M2/1‑147 (MQ=255)      gTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTa                                                                                                                                                 <  7:126532/149‑1 (MQ=255)       ttCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTAc                                                                                                                                                <  1:104941/149‑1 (MQ=255)            cATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAg                                                                                                                                            >  3:44452/1‑148 (MQ=255)             aTCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGa                                                                                                                                           >  5:151328/1‑148 (MQ=255)              tCGCCCACGGGCGTTACCGCCTTGTAGCTCTGTTAGAGATCATCTACAACGTCCAAGGGAGCCCGCCGGAACTGCAGGAAACCC‑TCTTCTTTCCCATGGTCAGTGTCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAAc                                                                                                                                         <  4:248933/149‑1 (MQ=255)                       tGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATca‑gc                                                                                                                               <  3:137043/149‑1 (MQ=255)                            cACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCa                                                                                                                          >  6:53183/1‑149 (MQ=255)                                   tGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGc                                                                                                                   >  4:283341/1‑149 (MQ=255)                                        gcgcGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGAt                                                                                                              <  4:44452/149‑1 (MQ=255)                                           cgGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGa                                                                                                           <  8:227617/149‑1 (MQ=255)                                           cgGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGa                                                                                                           <  7:171033/149‑1 (MQ=255)                                                  agaTCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGACTGTGa                                                                                                     >  6:24847/1‑148 (MQ=255)                                                   gaTCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGaaa                                                                                                   <  3:283341/149‑1 (MQ=255)                                                   gaTCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGaaa                                                                                                   <  3:7229/149‑1 (MQ=255)                                                    atcatcGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAg                                                                                                  >  6:82930/1‑149 (MQ=255)                                                       atcGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCa                                                                                               >  7:18257/1‑149 (MQ=255)                                                              aCGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGc                                                                                        <  1:184466/149‑1 (MQ=255)                                                               cGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCAGCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGc                                                                                        >  1:222787/1‑149 (MQ=255)                                                                    cAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATAcc                                                                                  >  8:57083/1‑149 (MQ=255)                                                                         aTCCCGCCGGCACTGCCGGAAACCC‑TCTGCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCtt                                                                             <  7:292063/149‑1 (MQ=255)                                                                             cgccgGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAgtg                                                                                                        <  1:142639/118‑1 (MQ=255)                                                                             cgccgGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAgtg                                                                                                        >  2:142639/1‑118 (MQ=255)                                                                              gccgGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGa                                                                        >  8:98891/1‑149 (MQ=255)                                                                              gccgGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGa                                                                        <  5:53183/149‑1 (MQ=255)                                                                                 ggAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGAttt                                                                     <  7:89937/149‑1 (MQ=255)                                                                                 ggAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGAtt                                                                      >  1:236303/1‑148 (MQ=255)                                                                                     cTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCTCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCATAACATCATCA‑GCCATCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCt                                                                 <  5:64940/149‑1 (MQ=255)                                                                                     cTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACCTCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCt                                                                 <  8:296877/149‑1 (MQ=255)                                                                                      tGCAGGAAACCC‑TCTTCTATCCCATGGTGAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTg                                                                >  1:193092/1‑149 (MQ=255)                                                                                        cAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGc                                                                                        <  4:222420/123‑1 (MQ=255)                                                                                        cAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGc                                                                                        >  3:222420/1‑123 (MQ=255)                                                                                        cAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGc                                                               <  6:151328/148‑1 (MQ=255)                                                                                         aGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGTCCATTACCCAGAACATAATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACCCTGGCCATACCGCCTTCTCTATTTACCTTcc                                                              >  4:252676/1‑148 (MQ=255)                                                                                           gAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGcc                                                                                                                                                     >  1:94237‑M2/1‑58 (MQ=255)                                                                                           gAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGcc                                                                                                                                                     <  2:94237‑M2/60‑3 (MQ=255)                                                                                           gAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCTATACCGCCTTCTCGATTTACCTGCctct                                                           >  6:344628/1‑149 (MQ=255)                                                                                           gAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCctct                                                           >  8:2397/1‑149 (MQ=255)                                                                                            aaaCCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTg                                                          <  5:82930/149‑1 (MQ=255)                                                                                               ccc‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGaa                                                       <  3:252676/149‑1 (MQ=255)                                                                                                cc‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGaa                                                       >  6:3229/1‑148 (MQ=255)                                                                                                cc‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAAc                                                      <  7:98891/149‑1 (MQ=255)                                                                                                   tcttctATCCCATGGTCAGTGGCCGCCCGGACGGTACGCGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAAc                                                      >  1:60821/1‑148 (MQ=255)                                                                                                       ctATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAg                                                   <  2:193092/146‑1 (MQ=255)                                                                                                            ccATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTGCGGCCTGGCCATTACCCAGAACAtcatca                                                                                                                                  <  1:192951/64‑1 (MQ=255)                                                                                                            ccATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACAtcatca                                                                                                                                  >  2:192951/1‑63 (MQ=255)                                                                                                            ccATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCAcc                                           >  3:229327/1‑149 (MQ=255)                                                                                                            ccATGGTCAGTGGCCGCCCGGACGGAAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGAGTTACCTGCCTCTGGAACAAGGAGCCAcc                                           >  5:331582/1‑149 (MQ=255)                                                                                                             cATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctcccaggcggtgacgcacgtggccgatggtgaact                                           <  7:274708‑M2/149‑109 (MQ=255)                                                                                                             cATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCg                                          >  5:162017/1‑149 (MQ=255)                                                                                                              aTGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatg                                                  >  7:129452‑M2/1‑40 (MQ=255)                                                                                                              aTGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatg                                                  <  8:129452‑M2/141‑102 (MQ=255)                                                                                                                  tCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCa                                     <  2:236303/149‑1 (MQ=255)                                                                                                                    aGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCAt                                    <  7:2397/148‑1 (MQ=255)                                                                                                                             ccGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCAGGCCAGCACCAGGGCCTCATCGAGTGTGAAAGCCACGCTGGCAATACCGCATTCTCGATTTACCTGCCTCTGGATCAAGGAGCCACCGCATCATGAGCCGAAg                           >  1:75445/1‑149 (MQ=255)                                                                                                                               ggACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTg                         >  2:101802/1‑148 (MQ=255)                                                                                                                                       c‑cGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTa                 <  5:24847/148‑1 (MQ=255)                                                                                                                                       c‑cGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTa                 <  2:222787/148‑1 (MQ=255)                                                                                                                                       c‑cGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTAt                <  5:3229/149‑1 (MQ=255)                                                                                                                                           ggCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTtct                                                                           >  3:8628/1‑87 (MQ=255)                                                                                                                                           ggCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTtct                                                                           <  4:8628/87‑1 (MQ=255)                                                                                                                                           ggCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTATGGa             >  3:235986/1‑149 (MQ=255)                                                                                                                                               g‑ggCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaactggcgcagggcgcggctgcgcaaggtgatgcgac          >  8:274708‑M2/1‑8 (MQ=255)                                                                                                                                                 ggCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGGACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTATGGAtcgtc        <  3:152977/149‑1 (MQ=255)                                                                                                                                                       gCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTATGGATCGTCGACgat  <  4:229327/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      CGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCC‑TCTTCTATCCCATGGTCAGTGGCCGCCCGGACGGTAC‑CGGGCTG‑GGCCTGGCCATTACCCAGAACATCATCA‑GCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCTCATGAGCCGAAGTGAAACCGTATGGATCGTCGACGAT  >  NC_002947/5754627‑5754922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.