New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5758899 =	48 (0.890)	3 (0.060)	3/256	NT	6.6%	coding (33/438 nt)	PP_5051	hypothetical protein
	?	NC_002947	5758932 =	39 (0.750)					coding (15/474 nt)	trmL	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL

CATCCAGTTCGAAGCTGATGGGTTCGATCAGGTGCAGGGCGCAGCCGCTGTTGGCGCATAGACGAATGATGTTGCCGGTATTCGGCGGAATTTCTGGTTGAAAAAGGATGACGTGAAACATGCACGGCTCCAAACGTGAAGATGACGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5759050‑5758899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACT  >  NC_002947/5758932‑5759045                                                                                                                                                                                                                                                                            CATCCAGTACGAAGCTCAAGCGTTCGATCAGGTCCAGGGCGCAGCCGCTGTTGCCGCATAGACGAATGATGTTGCCGGTATTCGGCGCAATTTCTGGTAGAAAAAGGATGACGTCAAACATGCACGGCTCCAAACGTGAAGAAGACGGG                                                                                                                       >  2:82945/1‑149     CAGTTCGAAGCTGATGGGTTCGATCAGGTGCAGGGCGCAGCCGCTGTTGGCGCATAGACGAATGATGTTGCCGGTATTCGGCGGAATTTCTGGTTGAAAAAGGATGACGTGAAACATGCACGGCTCCAAACGTGAAGATGACGGGCAgt                                                                                                                   >  3:244506/1‑147                                                                                                                   GAAACATGCACGGCTCCAAACGTGAAGATGACGGGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGAT                       >  3:152218/1‑131                                                                                                                   GAAACATGCACGGCTCCAAACGTGAAGATGACGGGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGAT                       <  4:152218/131‑1                                                                                                                      ACATGCACGGCTCCAAACGTGAAGATGACGGGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACT  >  4:158493/1‑149                                                                                                                                                                                                                                                                            CATCCAGTTCGAAGCTGATGGGTTCGATCAGGTGCAGGGCGCAGCCGCTGTTGGCGCATAGACGAATGATGTTGCCGGTATTCGGCGGAATTTCTGGTTGAAAAAGGATGACGTGAAACATGCACGGCTCCAAACGTGAAGATGACGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5759050‑5758899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACT  >  NC_002947/5758932‑5759045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.