New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5758899 =	48 (0.890)	3 (0.060)	3/256	NT	6.6%	coding (33/438 nt)	PP_5051	hypothetical protein
	?	NC_002947	5758932 =	39 (0.750)					coding (15/474 nt)	trmL	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL

CTCGTCCGGCGTAGTCAGGCGACCGATCATCAGCCCTACCATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAGCGCCTGCGCCGCGCAGGGC  >  NC_002947/5758785‑5759074                                                                                                                                                    |                                                                                                                                               agttcgaagctgatgggttcgatcaggtgcagggcgcagccgctgttggcgcatagacgaatgatgttgccggtattcggcggaatttctggttgaaaaaggatgacgtgaaacATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGt                                                                                                                                               >  4:158493‑M1/115‑149 (MQ=255)                 aGGCGACCGATCATCAGCCCTACCATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCtttt                                                                                                                               <  3:226504/149‑1 (MQ=255)                 aGGCGACCGATCATCAGCCCTACCATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCtttt                                                                                                                               >  5:173105/1‑149 (MQ=255)                      atcaggtgcagggcgcagccgctgttggcgcatagacgaatgatgttgccggtattcggcggaatttctggttgaaaaaggatgacgtgaaacATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTc                                                                                                                                            <  4:152218‑M1/38‑1 (MQ=255)                      atcaggtgcagggcgcagccgctgttggcgcatagacgaatgatgttgccggtattcggcggaatttctggttgaaaaaggatgacgtgaaacATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTc                                                                                                                                            >  3:152218‑M1/94‑131 (MQ=255)                        ctatcatcAGCCCTACCATCAAGCCTACTATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGTGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCa                                                                                                                        <  8:247884/147‑1 (MQ=255)                                 gCCCTACCATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGATATTccg                                                                                                               >  8:211945/1‑149 (MQ=255)                                 gCCCTACCATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTccg                                                                                                               >  4:22106/1‑149 (MQ=255)                                        cATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATa                                                                                                        >  7:37774/1‑149 (MQ=255)                                              gCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGc                                                                                                   >  2:247812/1‑148 (MQ=255)                                                  acgaTCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAAca                                                                                               >  7:220381/1‑148 (MQ=255)                                                     aTCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAAcatcat                                                                                           <  4:320601/149‑1 (MQ=255)                                                     aTCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAAcatcat                                                                                           >  7:71627/1‑149 (MQ=255)                                                       cGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTc                                                                                         >  2:63469/1‑149 (MQ=255)                                                        gCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTTCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTc                                                                                         <  2:292020/148‑1 (MQ=255)                                                        gCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTc                                                                                         <  6:173105/148‑1 (MQ=255)                                                         ccAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGt                                                                                       >  8:47508/1‑149 (MQ=255)                                                          cAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATTTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTc                                                                                      >  3:149182/1‑149 (MQ=255)                                                              gACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATg                                                                                  <  7:129081/149‑1 (MQ=255)                                                                   cATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGcc                                                                              >  4:40448/1‑148 (MQ=255)                                                                   cATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCa                                                                             <  8:115136/149‑1 (MQ=255)                                                                       aCCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAg                                                                         <  4:233821/149‑1 (MQ=255)                                                                         ccGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCg                                                                       <  8:37774/149‑1 (MQ=255)                                                                         ccGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCg                                                                       >  4:259606/1‑149 (MQ=255)                                                                           gTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGc                                                                     <  3:248617/149‑1 (MQ=255)                                                                           gTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGc                                                                     >  4:248617/1‑149 (MQ=255)                                                                               gAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTgcg                                                                 <  1:63469/149‑1 (MQ=255)                                                                                aaGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCAGTCATCTTCACGTTTGGAGACGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTgcgc                                                                >  1:291524/1‑149 (MQ=255)                                                                                  ggCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGccc                                                              <  1:247812/149‑1 (MQ=255)                                                                                     cTTCGATCTTACGTACGGTTCAGGGGTAGAATGCCCGTAATCTTCACGTTTTGAGCTGTGCATGTTTCACGTCATCCTTTTTCAAGCAGATATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCTTCTGCGCCCttc                                                           <  8:220381/149‑3 (MQ=255)                                                                                           aCGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGa                                                     <  2:76028/149‑1 (MQ=255)                                                                                                      gTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATTTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATc                                          <  4:149182/149‑1 (MQ=255)                                                                                                          aGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATACTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCt                                      >  1:89774/1‑149 (MQ=255)                                                                                                            gggTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCa                                            <  8:254729/141‑1 (MQ=255)                                                                                                            gggTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCa                                            >  7:254729/1‑141 (MQ=255)                                                                                                            gggTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTc                                    <  3:22106/149‑1 (MQ=255)                                                                                                            gggTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTc                                    >  6:50882/1‑149 (MQ=255)                                                                                                              gaaacatgcacggctccaaacgtgaagatgacgggcatGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGAt                                                    <  4:152218‑M2/93‑1 (MQ=255)                                                                                                              gaaacatgcacggctccaaacgtgaagatgacgggcatGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGAt                                                    >  3:152218‑M2/39‑131 (MQ=255)                                                                                                                 acatgcacggctccaaacgtgaagatgacgggcatGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACt                               >  4:158493‑M2/36‑149 (MQ=255)                                                                                                                  acTGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTg                              >  3:244506‑M1/3‑149 (MQ=255)                                                                                                                  aaTGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCAGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTg                              >  1:336335/1‑149 (MQ=255)                                                                                                                      CCCGTCTTCTTCACGTTTGGAGCCGTGCATGTTTGACGTCATCCTTTTTCTACCAGAAATTGCGCCGAATACCGGCAACATCATTCGTCTATGCGGCAACAGCGGCTGCGCCCTGGACCTGATCGAACGCTTGAGCTTCGTACTGGATg                          >  2:82945‑M1/1‑149 (MQ=255)                                                                                                                            aTCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTACGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAgc                    >  3:168552/1‑149 (MQ=255)                                                                                                                               ttCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAGCGcc                 >  3:131414/1‑149 (MQ=255)                                                                                                                                 cACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAgcgc                  <  3:40448/146‑1 (MQ=255)                                                                                                                                       tGGAGCCGTGCATGTTTCACTTCATCCTTTTTCAACCATAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAGCGCCTGcgccg          <  2:291524/148‑1 (MQ=255)                                                                                                                                             cGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAGCGCCTGCGCCGCGCAggg   <  7:47508/149‑1 (MQ=255)                                                                                                                                              gTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAGCGCCTGCGCCGCGCAGGGc  >  2:904/1‑149 (MQ=255)                                                                                                                                              gTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGAACCTGATCGAACCAATAAGCTTCGAACTGGATGACAAGCGCATGCGCCGCGCAGGGc  >  6:339808/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               CTCGTCCGGCGTAGTCAGGCGACCGATCATCAGCCCTACCATCAAGCCGACGATCGCCAACGACAGCATCACCCGTGGGAAGGCCTTCGAACGCACGTCCGGTTCAGGGGTAGAATGCCCGTCATCTTCACGTTTGGAGCCGTGCATGTTTCACGTCATCCTTTTTCAACCAGAAATTCCGCCGAATACCGGCAACATCATTCGTCTATGCGCCAACAGCGGCTGCGCCCTGCACCTGATCGAACCCATCAGCTTCGAACTGGATGACAAGCGCCTGCGCCGCGCAGGGC  >  NC_002947/5758785‑5759074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.