| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5789571 | 65 (1.210) | 7 (0.140) | 6/246 | NT | 9.8% | coding (728/1278 nt) | ynfM | efflux transporter |
| ? | NC_002947 | = 5789591 | 69 (1.380) | coding (748/1278 nt) | ynfM | efflux transporter | |||||
TCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5789421‑5789571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaaggaACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG < NC_002947/5789591‑5789445 TCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAG > 2:327918/1‑149TCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAG < 8:85920/149‑1 GCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAA < 2:228434/149‑1 GCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTG > 6:140347/1‑147 GCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGACGGCGTCATTG > 6:315297/1‑147 CGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGTAGTCAAGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGTACGGCTTTGTCATGCACTTCAAGTAACAGCCAGGGCAGGCCGGCGTCCTTGAAG < 5:315297/149‑1 CCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGC < 3:166837/149‑1 GCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATG < 5:140347/148‑1 GCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCAT < 2:316234/147‑1 CAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGC < 4:64453/147‑1 AAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAg > 7:313880/1‑148 GAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG > 2:253757/1‑149 GAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG > 4:314446/1‑149 TCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5789421‑5789571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaaggaACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG < NC_002947/5789591‑5789445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |