| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5990819 = | 64 (1.190) | 3 (0.060) | 3/240 | NT | 5.1% | intergenic (‑153/‑76) | ycaC‑III/PP_5249 | putative hydrolase/LysR family transcriptional regulator |
| ? | NC_002947 | 5990863 = | 53 (1.080) | intergenic (‑197/‑32) | ycaC‑III/PP_5249 | putative hydrolase/LysR family transcriptional regulator | |||||
TCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5990974‑5990819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaagaggccgGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGCGAATCGCCG > NC_002947/5990863‑5991009 TCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAA < 7:167363/149‑1TCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAA < 6:11411/149‑1 CAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAA > 1:220106/1‑147 AGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAG < 3:159489/149‑1 GCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGG < 1:215443/149‑1 CCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCC > 3:24770/1‑148 CGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCGCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGG > 3:173906/1‑149 TTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTC > 2:337987/1‑108 TTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTC < 1:337987/108‑1 GCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGG > 3:231332/1‑149 GCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGG > 7:235269/1‑149 CGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGC > 4:25026/1‑149 AAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGA < 2:47923/121‑1 AAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGA > 1:47923/1‑121 GCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGCGAATCGC > 4:245856/1‑149 CCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGCGAATCGCC < 3:25026/149‑1 CGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGCGAATCGCCG > 2:278874/1‑149 TCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5990974‑5990819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaagaggccgGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGCGAATCGCCG > NC_002947/5990863‑5991009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |