New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6005922 =	40 (0.740)	3 (0.060)	3/252	NT	7.0%	coding (785/1395 nt)	ydcJ	metalloprotein
	?	NC_002947	6005959 =	41 (0.800)					coding (822/1395 nt)	ydcJ	metalloprotein

CTTGTCGTAAAGCTGGCGACCTTTCGGCGTCAGCGCCGCGCCGCGTTGCTCGATTTCGCCAAAGCGTGCGGTGTGGCTGCCTTCGCGGCCTTGTTGGTCGCGGAAGGCGACCGTTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6006073‑6005922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggaAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGGGTGG  >  NC_002947/6005959‑6006105                                                                                                                                                                                                                                                                                                             CTTGTCGTAAAGCTGGCGACCTTTCGGCGTCAGCGCCGCGCCGCGTTGCTCGATTTCGCCAAAGCGTGCGGTGTGGCTGCCTTCGCGGCCTTGTTGGTCGCGGAAGGCGACCGTTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAG                                                                                                                                                          >  7:220387/1‑147    GTCGTAAAGCTGGCGACCTTTCGGCGTCAGCGCCGCGCCGCGTTGCTCGATTTCGCCAAAGCGTGCGGTGTGGCTGCCTTCGCGGCCTTGTTGGTCGCGGAAGGCGACCGTTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGGA                                                                                                                                                     >  4:285974/1‑149    GTCGTAAAGCTGGCGACCTTTCGGCGTCAGCGCCGCGCCGCGTTGCTCGATTTCGCCAAAGCGTGCGGTGTGGCTGCCTTCGCGGCCTTGTTGGTCGCGGAAGGCGACCGTTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGG                                                                                                                                                      <  8:131078/148‑1                                                                                                              ACCGTTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTT                                           >  7:259926/1‑149                                                                                                                  TTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTG                                                                                             >  8:314721/1‑95                                                                                                                  TTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTG                                                                                             <  7:314721/95‑1                                                                                                                                                   GCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACTCCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGAC                         <  3:238376/130‑1                                                                                                                                                   GCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACTCCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGAC                         >  4:238376/1‑130                                                                                                                                                   GCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGG      <  8:259926/149‑1                                                                                                                                                    CAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGG      <  2:327503/148‑1                                                                                                                                                    CAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGG      <  4:238463/148‑1                                                                                                                                                    CAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTG       <  3:208243/147‑1                                                                                                                                                    CAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGC                              >  4:36091/1‑124                                                                                                                                                    CAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGC                              <  3:36091/124‑1                                                                                                                                                    CAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCACCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTG       <  6:263254/147‑1                                                                                                                                                     AGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGGGT    >  6:345060/1‑149                                                                                                                                                     AGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGGGT    >  8:256177/1‑149                                                                                                                                                       GAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGGGTGG  <  7:256177/149‑1                                                                                                                                                       GAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGGGTGG  >  7:108046/1‑149                                                                                                                                                                                                                                                                                                             CTTGTCGTAAAGCTGGCGACCTTTCGGCGTCAGCGCCGCGCCGCGTTGCTCGATTTCGCCAAAGCGTGCGGTGTGGCTGCCTTCGCGGCCTTGTTGGTCGCGGAAGGCGACCGTTTCCTGCAGGGCCTTGAAGCTGGTCTGGCGCAGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6006073‑6005922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggaAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGACAAGTTGCTCGACGCTACCCGCGTTGCGCTGGGTGG  >  NC_002947/6005959‑6006105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.