New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6005922 =40 (0.740)3 (0.060) 3/252 NT 7.0% coding (785/1395 nt) ydcJ metalloprotein
?NC_002947 6005959 = 41 (0.800)coding (822/1395 nt) ydcJ metalloprotein

TCGCCGATGTGGTGGCCTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGAC  >  NC_002947/6005775‑6006070
                                                                                                                                                   |                                                                                                                                                     
ccacccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTc                                                                                                                                                      >  7:108046‑M1/148‑149 (MQ=255)
ccacccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTc                                                                                                                                                      <  7:256177‑M1/2‑1 (MQ=255)
  acccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCct                                                                                                                                                    >  8:256177‑M1/146‑149 (MQ=255)
  acccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCct                                                                                                                                                    >  6:345060‑M1/146‑149 (MQ=255)
   ccGATGTGGTGGCCTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCCACCGAtacag                                                                                                                                                   >  2:109777/1‑145 (MQ=255)
    ccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctgc                                                                                                                                                  <  8:259926‑M1/6‑1 (MQ=255)
    ccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg                                                                                                                                                   <  2:327503‑M1/5‑1 (MQ=255)
    ccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg                                                                                                                                                   <  4:238463‑M1/5‑1 (MQ=255)
     cagcgcaacgcgggtagcgtcgagcaacttgtcgtaaaggtggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg                                                                                                                                                   <  6:263254‑M1/5‑1 (MQ=255)
     cagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg                                                                                                                                                   <  3:208243‑M1/5‑1 (MQ=255)
                cTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCa                                                                                                                                      <  1:9864/149‑1 (MQ=255)
                 ttCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCCCCCCCTCCAGCGGCGcccagccag                                                                                                                                     >  7:212451/1‑142 (MQ=255)
                 ttCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAg                                                                                                                                     >  2:177480/1‑149 (MQ=255)
                      gggCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCa                                                                                                                                <  8:26542/149‑1 (MQ=255)
                       gtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggagtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctgc                                                                                                                                                  >  4:238376‑M1/125‑130 (MQ=255)
                       gtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggagtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctgc                                                                                                                                                  <  3:238376‑M1/6‑1 (MQ=255)
                        gaccGCACATCAAGCACCTGACCGCGCTTACCCTGGATATCGATGCAATCCAGCTCGGCATGCGTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAg                                                                                                                              <  5:197668/147‑1 (MQ=255)
                         cccGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAgg                                                                                                                             <  5:65599/149‑1 (MQ=255)
                            gcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg                                                                                                                                                   <  3:36091‑M1/5‑1 (MQ=255)
                            gcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg                                                                                                                                                   >  4:36091‑M1/120‑124 (MQ=255)
                               caTCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAGGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGc                                                                                                                       <  5:200929/149‑1 (MQ=255)
                                aTCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTc                                                                                                                                 <  2:197228/138‑1 (MQ=255)
                                aTCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTc                                                                                                                                 >  1:197228/1‑138 (MQ=255)
                                      caccTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGACCCCCCACCCGCCGCCCCCCGAAAAAGCAGCGCCCGACCAGCAGAAAAGCCCAGCAGGAAAc                                                                                                                >  8:220387/1‑149 (MQ=255)
                                        ccTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACgg                                                                                                              <  7:13895/149‑1 (MQ=255)
                                         aagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGt                                                                                                             >  7:259926‑M1/107‑149 (MQ=255)
                                           gACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCctgc                                                                                                                                                  >  6:82592/1‑110 (MQ=255)
                                              cccGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCt                                                                                                        >  2:31698/1‑149 (MQ=255)
                                              cccGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCt                                                                                                        >  8:203867/1‑149 (MQ=255)
                                                 gcgTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCCCCACCCCATCCTGCAGCGCCAGACCAGCTTCAAGGACCGGCAAGAAACCGTACCCttaa                                                                                                     >  5:86755/1‑147 (MQ=255)
                                                       ccTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCCCCCGATACTGCTGCGCCAGACCAGCTTAAAGGCCCTGCAGGAAACCGTCGCCTTCCGCGAc                                                                                               >  3:285974/1‑148 (MQ=255)
                                                           gATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCCCCCGCCCCCCCCCCAAGCTGCAGGGCCCGACCAGCTTGAATGGCCGGGAGGAAACCGTCGCCATTCGCGCCcaac                                                                                           >  5:209580/1‑148 (MQ=255)
                                                            atatCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACcaacaa                                                                                         <  5:321893/149‑1 (MQ=255)
                                                            atatCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACcaacaa                                                                                         <  3:292390/149‑1 (MQ=255)
                                                                 gATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCCCCGCCACCCCATCCAGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCcg                                                                                    >  2:238144/1‑149 (MQ=255)
                                                                     cAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGaa                                                                                <  1:172686/149‑1 (MQ=255)
                                                                      aaTCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAg                                                                               <  7:203867/149‑1 (MQ=255)
                                                                       aTCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAgg                                                                              >  8:45545/1‑149 (MQ=255)
                                                                        tCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTGGCCTTCCGCGACCAACAAGGCCGCGAAGGc                                                                             <  1:31698/149‑1 (MQ=255)
                                                                            ccttggcaggcaTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCCCCCGCCCCCCCCCCATCCAGCGGCGCCAGCCCAGCGTCAAGGCCCAGCAGGCAACGGTCGCCTTACGCGCCCCACAAGGCCGCGGAGGccgg                                                                          >  5:288584/5‑145 (MQ=255)
                                                                             cTCGGCATGCCTGCGAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTCCGCCAGACCAGCTTCAAGGCCCTGCATGAAACGGTCGGCTTGCGCGACCAACAAGGCCGCGAAGGCAGCca                                                                        <  1:255646/149‑1 (MQ=255)
                                                                                     gcctgccAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCACCCCCCCCCACCCCAACCAGCTGCCCCACACCAGCATAAAAGCCCTGCAGGAAACCGTCGCCATACGCGACCAACAAAGCCGCCAAAGCAACcccaccccac                                                                >  2:254790/1‑149 (MQ=255)
                                                                                           caaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGaaa                                                                                                                 >  8:314721‑M1/57‑95 (MQ=255)
                                                                                           caaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGaaa                                                                                                                 <  7:314721‑M1/39‑1 (MQ=255)
                                                                                             aGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGc                                                        <  6:209580/149‑1 (MQ=255)
                                                                                                   tCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCCCCCCCCGCCCCCCCCTACAGCTGCGCCACCCCCGCGTAAAGGCCCGGCAGGAAAACGTAGCCATAACCGACCCACAAAGCCCCCAAGGCACCCCCCCCCCCCCCGTTTGCGaaaaa                                                  >  6:198000/1‑147 (MQ=255)
                                                                                                     ccgccgAAGGCCGTGGTTGAAGGCCCCCCCACCCGCCGCCCCCCGATCCAGCGGCGCCACACCCGCGTCAAGGCCCAGCAGGAAACCGTCGCCATGCCCCCCCAACAACGCCGCGAACGCCGCCCCCCCCCCCCCATTGGCGaaaaaca                                                >  2:93483/1‑145 (MQ=255)
                                                                                                       gccgAAGGGCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGGTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCAGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAg                                               <  1:254790/149‑1 (MQ=255)
                                                                                                                    ggtGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAAcgcggcgcgg                                  <  8:212451/146‑1 (MQ=255)
                                                                                                                     ttGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGcggcgcggcg                                <  8:171690/149‑1 (MQ=255)
                                                                                                                             ccgcccACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGcc                        >  5:85166/1‑149 (MQ=255)
                                                                                                                               gcccACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGa                      <  7:275549/149‑1 (MQ=255)
                                                                                                                                 ccACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGaaa                    <  7:45545/149‑1 (MQ=255)
                                                                                                                                     ccgccgCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGATAGGTc                <  1:320265/149‑1 (MQ=255)
                                                                                                                                         cgccACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGCCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCa            <  1:238144/149‑1 (MQ=255)
                                                                                                                                             aCCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCtt        >  5:341996/1‑149 (MQ=255)
                                                                                                                                             aCCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCtt        >  4:10029/1‑149 (MQ=255)
                                                                                                                                               ccGATCCTGCGGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGTCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTa      <  6:288584/149‑1 (MQ=255)
                                                                                                                                                  aTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGa   <  6:86755/149‑1 (MQ=255)
                                                                                                                                                   TCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGAc  >  4:285974‑M1/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
TCGCCGATGTGGTGGCCTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGAC  >  NC_002947/6005775‑6006070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.