New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6005922 = | 40 (0.740) | 3 (0.060) | 3/252 | NT | 7.0% | coding (785/1395 nt) | ydcJ | metalloprotein |
? | NC_002947 | 6005959 = | 41 (0.800) | coding (822/1395 nt) | ydcJ | metalloprotein |
TCGCCGATGTGGTGGCCTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGAC > NC_002947/6005775‑6006070 | ccacccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTc > 7:108046‑M1/148‑149 (MQ=255) ccacccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTc < 7:256177‑M1/2‑1 (MQ=255) acccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCct > 8:256177‑M1/146‑149 (MQ=255) acccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCct > 6:345060‑M1/146‑149 (MQ=255) ccGATGTGGTGGCCTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCCACCGAtacag > 2:109777/1‑145 (MQ=255) ccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctgc < 8:259926‑M1/6‑1 (MQ=255) ccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg < 2:327503‑M1/5‑1 (MQ=255) ccagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg < 4:238463‑M1/5‑1 (MQ=255) cagcgcaacgcgggtagcgtcgagcaacttgtcgtaaaggtggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg < 6:263254‑M1/5‑1 (MQ=255) cagcgcaacgcgggtagcgtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg < 3:208243‑M1/5‑1 (MQ=255) cTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCa < 1:9864/149‑1 (MQ=255) ttCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCCCCCCCTCCAGCGGCGcccagccag > 7:212451/1‑142 (MQ=255) ttCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAg > 2:177480/1‑149 (MQ=255) gggCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCa < 8:26542/149‑1 (MQ=255) gtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggagtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctgc > 4:238376‑M1/125‑130 (MQ=255) gtcgagcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggagtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctgc < 3:238376‑M1/6‑1 (MQ=255) gaccGCACATCAAGCACCTGACCGCGCTTACCCTGGATATCGATGCAATCCAGCTCGGCATGCGTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAg < 5:197668/147‑1 (MQ=255) cccGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAgg < 5:65599/149‑1 (MQ=255) gcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg < 3:36091‑M1/5‑1 (MQ=255) gcaacttgtcgtaaagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCctg > 4:36091‑M1/120‑124 (MQ=255) caTCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAGGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGc < 5:200929/149‑1 (MQ=255) aTCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTc < 2:197228/138‑1 (MQ=255) aTCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTc > 1:197228/1‑138 (MQ=255) caccTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGACCCCCCACCCGCCGCCCCCCGAAAAAGCAGCGCCCGACCAGCAGAAAAGCCCAGCAGGAAAc > 8:220387/1‑149 (MQ=255) ccTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACgg < 7:13895/149‑1 (MQ=255) aagctggcgacctttcggcgtcagcgccgcgccgcgttgctcgatttcgccaaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGt > 7:259926‑M1/107‑149 (MQ=255) gACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCctgc > 6:82592/1‑110 (MQ=255) cccGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCt > 2:31698/1‑149 (MQ=255) cccGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCt > 8:203867/1‑149 (MQ=255) gcgTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCCCCACCCCATCCTGCAGCGCCAGACCAGCTTCAAGGACCGGCAAGAAACCGTACCCttaa > 5:86755/1‑147 (MQ=255) ccTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCCCCCGATACTGCTGCGCCAGACCAGCTTAAAGGCCCTGCAGGAAACCGTCGCCTTCCGC‑GAc > 3:285974/1‑148 (MQ=255) gATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCCCCCGCCCCCCCCCCAAGCTGCAGGGCCCGACCAGCTTGAATGGCCGGGAGGAAACCGTCGCCATTCGC‑GCCcaac > 5:209580/1‑148 (MQ=255) atatCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACcaacaa < 5:321893/149‑1 (MQ=255) atatCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACcaacaa < 3:292390/149‑1 (MQ=255) gATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCCCCGCCACCCCATCCAGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCcg > 2:238144/1‑149 (MQ=255) cAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGaa < 1:172686/149‑1 (MQ=255) aaTCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAg < 7:203867/149‑1 (MQ=255) aTCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAgg > 8:45545/1‑149 (MQ=255) tCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTGGCCTTCCGC‑GACCAACAAGGCCGCGAAGGc < 1:31698/149‑1 (MQ=255) ccttggcaggcaTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCCCCCGCCCCCCCCCCATCCAGCGGCGCCAGCCCAGCGTCAAGGCCCAGCAGGCAACGGTCGCCTTACGC‑GCCCCACAAGGCCGCGGAGGccgg > 5:288584/5‑145 (MQ=255) cTCGGCATGCCTGCGAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTCCGCCAGACCAGCTTCAAGGCCCTGCATGAAACGGTCGGCTTGCGC‑GACCAACAAGGCCGCGAAGGCAGCca < 1:255646/149‑1 (MQ=255) gcctgccAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCACCCCCCCCCACCCCAACCAGCTGCCCCACACCAGCATAAAAGCCCTGCAGGAAACCGTCGCCATACGC‑GACCAACAAAGCCGCCAAAGCAACcccaccccac > 2:254790/1‑149 (MQ=255) caaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGaaa > 8:314721‑M1/57‑95 (MQ=255) caaagcgtgcggtgtggctgccttcgcggccttgttggtcgcggaaggcgaccgttTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGaaa < 7:314721‑M1/39‑1 (MQ=255) aGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGc < 6:209580/149‑1 (MQ=255) tCCCGCCGAAGGCCGTGGTTGAAGGCCCCCCCCCCCCCCGCCCCCCCCTACAGCTGCGCCACCCCCGCGTAAAGGCCCGGCAGGAAAACGTAGCCATAACC‑GACCCACAAAGCCCCCAAGGCACCCCCCCCCCCCCCGTTTGCGaaaaa > 6:198000/1‑147 (MQ=255) ccgccgAAGGCCGTGGTTGAAGGCCCCCCCACCCGCCGCCCCCCGATCCAGCGGCGCCACACCCGCGTCAAGGCCCAGCAGGAAACCGTCGCCATGCCC‑CCCCAACAACGCCGCGAACGCCGCCCCCCCCCCCCCATTGGCGaaaaaca > 2:93483/1‑145 (MQ=255) gccgAAGGGCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGGTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGCAGACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAg < 1:254790/149‑1 (MQ=255) ggtGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAAcgcggcgcgg < 8:212451/146‑1 (MQ=255) ttGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGcggcgcggcg < 8:171690/149‑1 (MQ=255) ccgcccACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGcc > 5:85166/1‑149 (MQ=255) gcccACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGa < 7:275549/149‑1 (MQ=255) ccACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGaaa < 7:45545/149‑1 (MQ=255) ccgccgCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGATAGGTc < 1:320265/149‑1 (MQ=255) cgccACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGCCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCa < 1:238144/149‑1 (MQ=255) aCCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCtt > 5:341996/1‑149 (MQ=255) aCCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCtt > 4:10029/1‑149 (MQ=255) ccGATCCTGCGGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGTCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTa < 6:288584/149‑1 (MQ=255) aTCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGa < 6:86755/149‑1 (MQ=255) TCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGAc > 4:285974‑M1/1‑149 (MQ=255) | TCGCCGATGTGGTGGCCTTCAAGGGCCCGCACATCAACCACCTGACCCCGCGTACCCTGGATATCGATGCAATCCAGCTCGGCATGCCTGCCAAGGGCATCCCGCCGAAGGCCGTGGTTGAAGGCCCGCCCACCCGCCGCCACCCGATCCTGCTGCGCCAGACCAGCTTCAAGGCCCTGCAGGAAACGGTCGCCTTCCGC‑GACCAACAAGGCCGCGAAGGCAGCCACACCGCACGCTTTGGCGAAATCGAGCAACGCGGCGCGGCGCTGACGCCGAAAGGTCGCCAGCTTTACGAC > NC_002947/6005775‑6006070 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |