New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6164712	47 (0.870)	5 (0.100)	3/254	NT	8.6%	coding (571/2013 nt)	PP_5405	transposase
	?	NC_002947	= 6164746	61 (1.180)					coding (537/2013 nt)	PP_5405	transposase

CTTGTATGCATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6164560‑6164712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagaAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGGGAAAAAGGCATGGTTATCGTTGCGATGCAGAAATGCAGCAGAGGTTGCTAAAGGGGTTCCTCGCCAATAAATCCCCCCACAAGACTCAAAATAAGATCTA  <  NC_002947/6164746‑6164603                                                                                                                                                                                                                                                                                                           CTTGTATGCATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGC                                                                                                                                                      <  3:325472/149‑1    GTATGCATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGA                                                                                                                                                    <  7:66043/148‑1    GTATGCATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGC                                                                                                                                                      <  3:262083/146‑1          ATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGA                                                                                                                                                  >  5:127228/1‑144          ATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGA                                                                                                                                                  <  6:127228/144‑1                                                    ATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGAAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAG                                                                                                       <  5:339946/145‑1                                                                  GGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGAAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGG                                                                                                      <  7:62303/132‑1                                                                  GGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGAAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGG                                                                                                      <  7:66925/132‑1                                                                  GGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGAAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGG                                                                                                      >  8:62303/1‑132                                                                  GGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGAAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGG                                                                                                      >  8:66925/1‑132                                                                                                                                                       AGAAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGGGAAAAAGGCATGGTTATCGTTGCGATGCAGAAATGCAGCAGAGGTTGCTAAAGGGGTTCCTCGCCAATAAATCCCCCCACAAGACTCAAAATAAGATCTA  >  4:224408/1‑147                                                                                                                                                                                                                                                                                                           CTTGTATGCATTGCAGCCAAACTCTCCTGTAAGGATGTCGCTGTAGATCTTATTTTGAGTCTTGTGGGGGGATTTATTGGCGAGGAACCCCTTTAGCAACCTCTGCTGCATTTCTGCATCGCAACGATAACCATGCCTTTTTCCCTTGCGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6164560‑6164712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagaAGGGCCAGGGCGTATGACGAAGCTTGGTCGGCCCTCTCGCAAGGGAAAAAGGCATGGTTATCGTTGCGATGCAGAAATGCAGCAGAGGTTGCTAAAGGGGTTCCTCGCCAATAAATCCCCCCACAAGACTCAAAATAAGATCTA  <  NC_002947/6164746‑6164603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.