| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 10913 | 23 (0.430) | 3 (0.060) | 3/254 | NT | 14.2% | coding (1372/1521 nt) | dnaA | chromosomal replication initiator protein |
| ? | NC_002947 | = 10947 | 14 (0.270) | coding (1406/1521 nt) | dnaA | chromosomal replication initiator protein | |||||
GACAAACTGGTCAGTGTGGATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGGACGCTGACGACCT > NC_002947/10769‑11060 | gACAAACTGGTCAGTGTGGATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGaccaacca > 2:317606/1‑149 (MQ=255) aaaCTGGTCAGTGTGGATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAg > 2:44912/1‑149 (MQ=255) gTCAGTGTGGATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGc < 1:44912/148‑1 (MQ=255) tgtgGATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGaaa < 8:300850/149‑1 (MQ=255) gATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCgg < 6:162686/149‑1 (MQ=255) gATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCgg < 7:45324/149‑1 (MQ=255) tAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGc > 7:85014/1‑148 (MQ=255) aCATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGa < 7:98026/148‑1 (MQ=255) tACCGTGGCTGAGTACTACAAGATGAAGATCTCCGATCTGTTGTCCAAGCGTCGTTGGCGTTCTGTCGCGCGCCCGCGGCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGtg > 5:63020‑M2/1‑147 (MQ=255) cGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGtggtc > 6:57549‑M2/1‑144 (MQ=255) gTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTcg < 7:39006/149‑1 (MQ=255) gCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGa < 8:85014/149‑1 (MQ=255) cTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGAc > 7:202187/1‑149 (MQ=255) tGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAccgaacatgtcgccgatttccggcagactgtggttggtcaact > 4:273821‑M1/1‑104 (MQ=255) tGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAccgaacatgtcgccgatttccggcagactgtggttggtcaact < 3:273821‑M1/147‑44 (MQ=255) aGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGAcc < 8:202187/147‑1 (MQ=255) gTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAccgaacatgtcgccgatttccggcagactgtggttggtcaactccttg < 7:214307‑M1/149‑49 (MQ=255) aagatcTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCa > 6:51647/1‑149 (MQ=255) ccGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCg < 2:216051/95‑1 (MQ=255) ttgtCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTACCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCa < 3:292978/145‑1 (MQ=255) tCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCaa < 7:242484/149‑1 (MQ=255) cAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAAt < 1:317606/148‑1 (MQ=255) aGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGaa < 3:296467/149‑1 (MQ=255) tCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGAcgcg < 5:51647/149‑1 (MQ=255) ggTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGaa < 3:239516/115‑1 (MQ=255) ggTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGACTGCCGCAAAATCAATGaa > 4:239516/1‑115 (MQ=255) aTGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGACGCGGACATCCGCGAGGACTACAAGaa > 4:29667/1‑149 (MQ=255) cAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGtggtcaactccttggacagggccatggctacctgacgcgggcgcgcgacagaacgcgaacgacgcttggacaacagatcggagatcttgatcttgtagtac < 7:214307‑M2/149‑102 (MQ=255) cAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGACGCGGACATCCGCGAg > 2:119727/1‑127 (MQ=255) cAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGACGCGGACATCCGCGAg < 1:119727/127‑1 (MQ=255) aGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGtggtcaactccttggacagggccatggctacctgacgcgggcgcgcgacagaacgcgaacgacgcttggacaacagatcggagatcttgatcttgtagtactca > 4:273821‑M2/1‑43 (MQ=255) aGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGtggtcaactccttggacagggccatggctacctgacgcgggcgcgcgacagaacgcgaacgacgcttggacaacagatcggagatcttgatcttgtagtactca < 3:273821‑M2/147‑105 (MQ=255) gACCAccgaacatgtcgccgatttccggcagactgtggttggtcaactccttggacagggccatggctacctgacgcgggcgcgcgacagaacgcgaacgacgcttggacaacagatcggagatcttgatcttgtagtactcagcgacg > 6:57549‑M1/1‑5 (MQ=255) gACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGACGCGGACATCCGCGAGGACCACAAGAACCTGCTGCGGACGCTgacga > 6:176569/1‑149 (MQ=255) caccgaacatgtcgccgatttccggcagactgtggttggtcaactccttggacagggccatggctacctgccgcgggcgcgcgacagaacgccaacgacgcttggacaacagatcggagatcttcatcttgtagtactcagccacggta > 5:63020‑M1/1‑2 (MQ=255) | GACAAACTGGTCAGTGTGGATAACATTCAGCGTACCGTCGCTGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCTGTCGCGCGCCCGCGTCAGGTAGCCATGGCCCTGTCCAAGGAGTTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGCGACCATACGACCGTGCTGCACGCCTGCCGCAAAATCAATGAACTGAAGGAATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGGACGCTGACGACCT > NC_002947/10769‑11060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |