New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1612788 =	49 (0.910)	3 (0.060)	3/254	NT	5.8%	coding (585/693 nt)	ung	uracil‑DNA glycosylase
	?	NC_002947	1612843 =	51 (0.980)					coding (640/693 nt)	ung	uracil‑DNA glycosylase

TTTACCGACAGGATTATCCAGGTGGTCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCAT  >  NC_002947/1612648‑1612934                                                                                                                                             |                                                                                                                                                   tttACCGACAGGATTATCCAGGTGGTCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCgg                                                                                                                                             <  2:29753/148‑1 (MQ=255)        aCAGGATTATCCAGGTGGTCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATcgc                                                                                                                                     >  4:77141/1‑149 (MQ=255)             aTTATCCAGGTGGTCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGtt                                                                                                                                >  5:309765/1‑149 (MQ=255)              ttgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcacagcgggggcagtgcccagtcgatgggcccgagcccccgctgctcgaggaag                                                                                                                                                    >  6:305732‑M1/128‑128 (MQ=255)              ttgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcacagcgggggcagtgcccagtcgatgggcccgagcccccgctgctcgaggaag                                                                                                                                                    <  5:305732‑M1/1‑1 (MQ=255)                     ggtggtCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGtt                                                                                                                        <  3:77141/149‑1 (MQ=255)                         gtCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCgg                                                                                                                    <  6:180277/149‑1 (MQ=255)                                 gCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCAttt                                                                                                              >  5:214318/1‑147 (MQ=255)                                        ccGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGc                                                                                                     >  2:49923/1‑149 (MQ=255)                                         cgtaCGTGGGGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCGTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGGGGGCATTTCAGCCGTGcc                                                                                                    <  2:324350/146‑1 (MQ=255)                                           aaCGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCggg                                                                                                                   >  1:76003/1‑132 (MQ=255)                                           aaCGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCggg                                                                                                                   <  2:76003/132‑1 (MQ=255)                                             cGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACa                                                                                                <  7:7950/149‑1 (MQ=255)                                             cGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACa                                                                                                <  6:309765/149‑1 (MQ=255)                                                    acgccctgagcgattgcgtaccccaccgcggtttctcacagcgggggcagtgcccagtcgatgggcccgagcccccgctgctcgaggaaGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTcc                                                                                          >  2:276693‑M1/90‑148 (MQ=255)                                                       cTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGa                                                                                      <  1:49923/149‑1 (MQ=255)                                                        tGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTTCTCGACGGTACCAAGCATCTGGGTTTGAAGTCGGTCCATCCTTCGCCGCGGTCGGCGTATAGCGGGGTCATCGGTTGCGGGCGTGTGAGTCTTGCGATCAGCATCCTCGag                                                                                     >  4:25603/1‑149 (MQ=255)                                                           tATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTAAGCAGTGCAAACAGCTTCCACgctgct                                                                                  >  8:224940/1‑144 (MQ=255)                                                           gagcgattgcgtaccccaccgcggtttctcacagcgggggcagtgcccagtcgatgggcccgagcccccgctgctcgaggaaGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCt                                                                                         <  8:294974‑M1/60‑1 (MQ=255)                                                           gagcgattgcgtaccccaccgcggtttctcacagcgggggcagtgcccagtcgatgggcccgagcccccgctgctcgaggaaGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCt                                                                                         >  7:294974‑M1/83‑142 (MQ=255)                                                                      cATGCACTGAGCAAGCAGAAGCTGATGGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCgg                                                                       <  4:105034/149‑1 (MQ=255)                                                                       aTGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCggg                                                                      >  8:294115/1‑149 (MQ=255)                                                                           acaGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCa                                                                  >  5:148949/1‑149 (MQ=255)                                                                             agagCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGATCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATc                                                                <  1:45303/149‑1 (MQ=255)                                                                               agcaagcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGc                                                                           <  5:318169/136‑1 (MQ=255)                                                                               agcaagcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGc                                                                           >  6:318169/1‑136 (MQ=255)                                                                                   agcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTgg                                                          <  7:294115/149‑1 (MQ=255)                                                                                    gcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAACTCGGTCGATCCATCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGACAACAGCTTACTCGAGCAGAGGGGGCTCGGGCCCATCGACTgcg                                                         >  7:9288/1‑147 (MQ=255)                                                                                        aaGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACt                                                     >  1:137740/1‑149 (MQ=255)                                                                                        aaGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTGCATCGGTTGCGGGCATTTCAGCCGTGCCATCAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACt                                                     <  1:242155/149‑1 (MQ=255)                                                                                          gCTGATCGTCGGTACGAAGCTTCTGGTTTTTAAGTCGGTCCATCGTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTGAGCCGTGCCAAGAGCTTCCTCGAGCAGCGGGGGCTCTGGCCCATCGACTGGGCACTGc                                                   <  8:9288/149‑1 (MQ=255)                                                                                          gCTGATCCACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGAATCGCGGGTACATCGGTTGCGGGCATTTCAGCAGTGCCAACACCTTCCACGAGCAGCGGGGCGTCGGGCCCGTCGGCTGGGCACTGc                                                   >  8:317231/1‑149 (MQ=255)                                                                                              aTCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGccc                                                 <  7:21892/147‑1 (MQ=255)                                                                                                 gACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGAATTTCAGCCGTGCCAACAGCTTCATCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCt                                            >  3:201345/1‑149 (MQ=255)                                                                                                  aCGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtg                                           >  3:79577/1‑149 (MQ=255)                                                                                                   cGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCAACTGGGCACTGCCCCCGCtgt                                          <  6:148949/149‑1 (MQ=255)                                                                                                      tACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgt                                          >  5:117650/1‑146 (MQ=255)                                                                                                          aaGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGa                                                                                      <  8:259589/98‑1 (MQ=255)                                                                                                          aaGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGa                                                                                      >  7:259589/1‑98 (MQ=255)                                                                                                          aaGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAAc                                   >  1:324167/1‑149 (MQ=255)                                                                                                                   gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTggg                          >  2:301683/1‑149 (MQ=255)                                                                                                                        gAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCAc                                                      <  4:315765/116‑1 (MQ=255)                                                                                                                        gAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCAc                                                      >  3:315765/1‑116 (MQ=255)                                                                                                                        gAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACg                     >  8:176735/1‑149 (MQ=255)                                                                                                                         aaGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgt                                          <  2:335126/127‑1 (MQ=255)                                                                                                                         aaGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgt                                          >  1:335126/1‑127 (MQ=255)                                                                                                                         aaGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACg                     >  2:59852/1‑148 (MQ=255)                                                                                                                         aaGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACg                     <  6:117650/148‑1 (MQ=255)                                                                                                                           gTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCaa                  <  1:59852/149‑1 (MQ=255)                                                                                                                             cGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATc                <  4:79577/149‑1 (MQ=255)                                                                                                                               gTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCg               >  5:280912/1‑148 (MQ=255)                                                                                                                               gTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCCCTGTGAGAAACCGCGGTAGGGTACGCAATCGc              >  2:237854/1‑149 (MQ=255)                                                                                                                                  cATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCa           <  6:102970/149‑1 (MQ=255)                                                                                                                                   aTCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAg          >  7:171317/1‑149 (MQ=255)                                                                                                                                          gccgcTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtc    <  1:133856/148‑1 (MQ=255)                                                                                                                                           ccgcTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcat  >  5:216562/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                   TTTACCGACAGGATTATCCAGGTGGTCAGTGAGCAATGCCCGAACGTGGTGTTCCTGCTATGGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCAT  >  NC_002947/1612648‑1612934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.