New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2059591	41 (0.760)	3 (0.060)	3/246	NT	6.7%	intergenic (+25/+99)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
	?	NC_002947	= 2059654	45 (0.900)					intergenic (+88/+36)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter

GAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAACATCATCACCGCAAACCCGCCCA  >  NC_002947/2059447‑2059736                                                                                                                                                 |                                                                                                                                                  gAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGc                                                                                                                                               <  4:317432/149‑1 (MQ=255) gAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGc                                                                                                                                               <  5:129485/149‑1 (MQ=255)   gCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGccc                                                                                                                                             <  2:283048/149‑1 (MQ=255)        aGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTcc                                                                                                                                        <  5:223049/149‑1 (MQ=255)          aTGGTCATGGTGGGGCAGCAGGACCTGGCGGGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCt                                                                                                                                      >  1:27590/1‑149 (MQ=255)             gTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAg                                                                                                                                   <  2:306180/149‑1 (MQ=255)              tCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAgg                                                                                                                                  >  4:226494/1‑149 (MQ=255)              tCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAgg                                                                                                                                  <  2:27590/149‑1 (MQ=255)                            cagGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATc                                                                                                                    <  4:87700/149‑1 (MQ=255)                            cagGACCTGGCGCGGGTAATGGAGTTGGGACCAGAGCTGGGCATCAAGGGCGAGCCGGCGCGGGAGGCTTTGAAAGGCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATc                                                                                                                    <  2:272488/149‑1 (MQ=255)                                 ccTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGcc                                                                                                               >  8:11274/1‑149 (MQ=255)                                  cTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAg                                                                                                                                   <  1:277140/128‑1 (MQ=255)                                  cTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAg                                                                                                                                   >  2:277140/1‑128 (MQ=255)                                  cTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGccc                                                                                                              >  3:137137/1‑149 (MQ=255)                                    ggCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTCCTCCAGCGCATCAGGCCCtg                                                                                                            >  4:249551/1‑149 (MQ=255)                                       gcgGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGa                                                                                                         >  1:270980/1‑149 (MQ=255)                                             aaTGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGcc                                                                                                               >  4:213657/1‑137 (MQ=255)                                             aaTGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGcc                                                                                                               <  3:213657/137‑1 (MQ=255)                                             aaTGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAAccc                                                                                                   >  7:105746/1‑149 (MQ=255)                                                ggAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCtgt                                                                                                >  7:55079/1‑149 (MQ=255)                                                 gAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCtcgcccgctcccacagggttatcacagggcctgatgcgctggagtacctgag                                                                                               >  2:125833‑M1/1‑97 (MQ=255)                                                          gCAGAGCTGGGCATCAAGGTCGAGCCGGCGCGGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGc                                                                                      <  8:20699/149‑1 (MQ=255)                                                                cTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCtcgcccgctcccacagggttatcacagggcctgatgcgctggagtacctgagggagcgggcatgccc                                                                                <  1:125833‑M1/149‑68 (MQ=255)                                                                  gggCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCCGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAgcccgc                                                                              >  3:249551‑M2/1‑143 (MQ=255)                                                                   ggCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCtcgcccgctcccacagggttatcacagggcctgatgcgctggagtacctgagggagcgggcatgcccg                                                                               <  8:138551‑M1/147‑69 (MQ=255)                                                                       tCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGGCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAaga                                                                         <  7:134288/149‑1 (MQ=255)                                                                                 gCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCgg                                                                   <  8:20238/145‑1 (MQ=255)                                                                                 gCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCgg                                                                   >  7:20238/1‑145 (MQ=255)                                                                                 gCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCa                                                               >  6:50337/1‑149 (MQ=255)                                                                                     gcgcTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGaa                                                           <  5:50337/149‑1 (MQ=255)                                                                                      cgcTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGaaa                                                          <  3:226494/149‑1 (MQ=255)                                                                                       gcTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAAc                                                         <  7:11274/149‑1 (MQ=255)                                                                                                tttGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCtt                                                >  1:82732/1‑149 (MQ=255)                                                                                                    aaaGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGcc                                                                     >  7:256024/1‑124 (MQ=255)                                                                                                    aaaGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGcc                                                                     <  8:256024/124‑1 (MQ=255)                                                                                                        tCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCt                                                                 >  2:128100/1‑124 (MQ=255)                                                                                                        tCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCt                                                                 <  1:128100/124‑1 (MQ=255)                                                                                                                   aTCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCga                             <  8:55079/149‑1 (MQ=255)                                                                                                                       gATACCAGTGATTACTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGaaa                         >  2:263118/1‑149 (MQ=255)                                                                                                                        cacccAGTGCTTGCTTGTTCGGGGGCATGCCCGCTCCCTCAGGTACGCCAGCGCATCCGGCCCTGGTATAACCCTGGGGGAGCGGGCGAGCCCGCGAATAGGCCGGCTAACGAAACATCAATCTTCCGCCCAGCGCAGTGTCGAGAAAc                        <  7:51411/146‑1 (MQ=255)                                                                                                                         tACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAgtg                                 >  2:34734/1‑139 (MQ=255)                                                                                                                         tACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAgtg                                 <  1:34734/139‑1 (MQ=255)                                                                                                                            cAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAAcatca                    >  2:53441/1‑149 (MQ=255)                                                                                                                              gTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCa                                              <  2:1969/121‑1 (MQ=255)                                                                                                                              gTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCa                                              >  1:1969/1‑121 (MQ=255)                                                                                                                                      ttGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAACAtcatca                 <  3:290844/142‑1 (MQ=255)                                                                                                                                      ttGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAACAtcatca                 >  4:290844/1‑142 (MQ=255)                                                                                                                                            gcgGGCtcgcccgctcccacagggttatcacagggcctgatgcgctggagtaccggagggagcgggcatgcccgcgaacaagcaatcactggtatcagatgtggacggcgactttcaaagcctccagcgccggctcgaccttgatgccc    >  3:249551‑M1/1‑6 (MQ=255)                                                                                                                                             cgGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAgcccgcgaacaagcaatcactggtatcagatgtggacggcgactttcaaagcctccagcgccggctcgaccttgatgcc     <  8:138551‑M2/147‑80 (MQ=255)                                                                                                                                              gggCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAgcccgcgaacaagcaatcactggtatcagatgtggacggcgactttcaaagcctccagcgccggctcgaccttgatgcccag  <  1:125833‑M2/149‑83 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAACATCATCACCGCAAACCCGCCCA  >  NC_002947/2059447‑2059736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.