| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2085512 = | 32 (0.590) | 8 (0.160) | 4/248 | NT | 20.5% | intergenic (+221/‑374) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | 2256179 = | 32 (0.630) | intergenic (+239/‑465) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase | |||||
TGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAAT > NC_002947/2085368‑2085652 | caaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccGCAAg > 8:64972‑M1/145‑149 (MQ=255) ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCCGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc > 6:203568/1‑149 (MQ=17) cTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCg < 6:230073/148‑1 (MQ=32) ggTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGa > 7:152035/1‑149 (MQ=32) tAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGAcc > 3:325088/1‑149 (MQ=32) aGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGa < 2:285025/148‑1 (MQ=32) aGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGGGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGag < 3:300199/149‑1 (MQ=17) aTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgtag > 3:106468/1‑149 (MQ=31) tGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgtagc > 4:236035/1‑149 (MQ=11) gaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAggg > 7:18398/1‑149 (MQ=32) gaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAggg > 3:104937/1‑149 (MQ=32) ctcactccgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccGCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGATGGGAGcc < 4:11154‑M1/57‑1 (MQ=255) cGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGcc > 5:234111/1‑149 (MQ=32) cgcAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCGGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACg < 8:244469/149‑1 (MQ=17) tccgggcttgctcccgggaggaccgcgctgcaggccccatcctggggccccgcgcttgacgggcatccatgcccgtcacctccctccGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGC‑GCAGGGGCCGGATGATGGGAGCGGACgg < 7:269265‑M1/62‑1 (MQ=255) cgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctcccttcGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGC‑GCAGGGGCCGGATGataggagccagcgttt < 7:138392‑M1/64‑8 (MQ=255) aGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCt > 8:269008/1‑149 (MQ=33) gggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCtt < 3:98693‑M1/65‑1 (MQ=255) gCTTGCGGAGGGAGGGGACGGGCATGGATGCCCGTCAAGCGCGGGGCCCCAGGATGGGGCCGGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑g < 7:231829/149‑1 (MQ=255) ggcggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCTGTTTGGGGCCGGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTg‑g < 8:18398/146‑1 (MQ=11) tGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTACAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGc > 8:153561/1‑123 (MQ=17) tGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTACAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGc < 7:153561/123‑1 (MQ=17) gggCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACggcgg > 1:121997/1‑145 (MQ=21) gggCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGAcc > 3:11249/1‑148 (MQ=34) gctgcaggccccatcctggggcccagcgtttgacgggcatccatgcccgtcacctccctccGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGC‑GCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGaca < 8:258629‑M1/87‑2 (MQ=255) gCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCa > 7:110594/1‑147 (MQ=34) aaGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAg > 1:23618/1‑149 (MQ=34) aaGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAg < 2:23618/149‑1 (MQ=34) tgcaggCCCCATCCTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCg > 3:118448/5‑149 (MQ=255) ggCCCCTGTTTGGGGCCTGCTGGGGGGTCCTCGGGGTTGCATGCCGGGTGTTTGGGGACCCGGTTGCGTAGC‑TTTGGGGCGGGATGTGGGTAGCCGACGGGTTT‑GGTTAGTTTG‑GCCACGACCAAATAAACCCGCCGGAAGGGCGGaaa < 4:106468/149‑1 (MQ=2) aTGGGGCCGGCAGGGCGGGCCCCCGGGTAGCAAGCCCGGTGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAg < 3:236035/149‑1 (MQ=11) ggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCAGGAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGgcg > 1:267724/1‑149 (MQ=255) ggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGgcgc > 7:78371/1‑149 (MQ=34) ggcccAGCGCGGTCCTCCGGGCCGCATGCCCGTTGTGCGGGCACCCCGGAGCTTCGG‑TTGGGGGCGGGATGAGGGTAGCCGACGGCTTT‑GTTTACTTTG‑CCCACTACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCt < 4:294249/145‑1 (MQ=2) ccatgcccgtcacctccctccGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCa < 7:239243‑M1/86‑1 (MQ=255) ccatgcccgtcacctccctccGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCa > 8:239243‑M1/22‑107 (MQ=255) ccgggcgGTCCTCCGGGGCCCAAGCCCGTTGTGTGGGGACCCGGGAGCGTAGC‑TTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAATTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCAt < 2:267724/145‑1 (MQ=11) cgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtg > 5:134504/1‑148 (MQ=37) tcctccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaat > 3:53223/1‑148 (MQ=37) ctccctccGCATGCCGGGTGTGTGGGCACCCGGGTGGTTAGG‑TTTGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat > 4:98693‑M1/9‑149 (MQ=255) ccGGTAGCACGCCCGTTGTGTGGGGACCCCGGAGCGTCGG‑GTAGGGGCCGTATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat < 4:53223/147‑1 (MQ=11) | TGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGC‑GTAGGGGCCGGATGAGGGGAGCCGACGGCTTT‑GGTTACTTTG‑GCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAAT > NC_002947/2085368‑2085652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |