New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2343629 =	44 (0.820)	3 (0.060)	3/256	NT	6.5%	coding (75/249 nt)	PP_2059	hypothetical protein
	?	NC_002947	2343671 =	43 (0.820)					coding (33/249 nt)	PP_2059	hypothetical protein

AGTGTGACGGCGGCGGTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGT  >  NC_002947/2343483‑2343777                                                                                                                                                   |                                                                                                                                                     cggcgcgcatgacctgcaggtgacaaacagtcgctttgaaccattgcgacgaatcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGAc                                                                                                                                                    >  5:261528‑M1/147‑149 (MQ=255)    gtgACGGCGGCGGTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGAc                                                                                                                                                    >  2:11608/1‑146 (MQ=255)     tgACGGCGGCGGTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAgg                                                                                                                                                >  7:139022/1‑149 (MQ=255)     tgACGGCGGCGGTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAg                                                                                                                                                 <  8:23707/148‑1 (MQ=255)        cggcggcggTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGa                                                                                                                                             <  7:275536/149‑1 (MQ=255)                gTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGgc                                                                                                                                     >  8:287076/1‑149 (MQ=255)                                    gggCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGc                                                                                                                                               >  4:152586/1‑119 (MQ=255)                                    gggCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGc                                                                                                                                               <  3:152586/119‑1 (MQ=255)                                        ttttCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtc                                                                                                             >  7:65412/1‑149 (MQ=255)                                           attgcgacgaatcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtcttc                                                                                                          >  1:153282‑M1/105‑149 (MQ=255)                                             cTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTg                                                                                                        <  7:313951/149‑1 (MQ=255)                                                 acgaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTac                                                                                                    <  2:185556/149‑1 (MQ=255)                                                 acgaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTac                                                                                                    <  2:190842/149‑1 (MQ=255)                                                   gaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTacac                                                                                                  >  3:283250/1‑149 (MQ=255)                                                   gaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGACGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTaca                                                                                                   >  1:37901/1‑148 (MQ=255)                                                     acgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCt                                                                                                <  1:308467/149‑1 (MQ=255)                                                     acgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCt                                                                                                <  1:304488/149‑1 (MQ=255)                                                      tcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtcttct                                                                                                         <  2:165192‑M1/46‑1 (MQ=255)                                                      tcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtcttct                                                                                                         >  1:165192‑M1/94‑139 (MQ=255)                                                         ggACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGa                                                                                            <  4:77487/149‑1 (MQ=255)                                                          gACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGAt                                                                                           <  4:90520/149‑1 (MQ=255)                                                             acCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGACTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTg                                                                                        >  5:311141/1‑149 (MQ=255)                                                                gtgtCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTc                                                                                     <  5:98490/149‑1 (MQ=255)                                                                     cAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGAt                                                                                           <  7:86661/138‑1 (MQ=255)                                                                     cAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGAt                                                                                           >  8:86661/1‑138 (MQ=255)                                                                       gggTGTCGCCGTAGGTCTTGGTCACCTGGCCTGAGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGttt                                                                               >  4:312239/1‑148 (MQ=255)                                                                         gtgtCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCat                                                                            >  4:315946/1‑149 (MQ=255)                                                                            tCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCatga                                                                          <  7:287076/148‑1 (MQ=255)                                                                              gCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATgg                                                                       <  8:65412/149‑1 (MQ=255)                                                                               ccGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTg                                                                                                                               <  1:327175/92‑1 (MQ=255)                                                                               ccGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTg                                                                                                                               >  2:327175/1‑92 (MQ=255)                                                                               ccGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGc                                                                      >  7:306441/1‑149 (MQ=255)                                                                                cGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACATTCGATCTGTTCGCGTTTCATGATGGCt                                                                     >  1:281768/1‑149 (MQ=255)                                                                                  tAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTa                                                                   <  3:315946/149‑1 (MQ=255)                                                                                    ggTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAg                                                                  <  3:312239/148‑1 (MQ=255)                                                                                       cTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttc                                                               <  2:69357/148‑1 (MQ=255)                                                                                       cTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttc                                                               >  1:69357/1‑148 (MQ=255)                                                                                        ttGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttcct                                                             >  5:20610/1‑149 (MQ=255)                                                                                           gTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttccttc                                                           <  8:139022/148‑1 (MQ=255)                                                                                            tCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTtccttcct                                                         <  7:280039/149‑1 (MQ=255)                                                                                                    ccTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCgg                                                 >  1:66712/1‑149 (MQ=255)                                                                                                        cGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCttt                                             <  2:66712/149‑1 (MQ=255)                                                                                                             tGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGt                                         >  5:6256/1‑148 (MQ=255)                                                                                                                     aTCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGca                                 >  5:197016/1‑148 (MQ=255)                                                                                                                        gCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAgg                             <  4:283250/149‑1 (MQ=255)                                                                                                                          cTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAggga                           <  8:306441/149‑2 (MQ=255)                                                                                                                             cGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGtt                          <  1:156405/147‑1 (MQ=255)                                                                                                                                    cAGCGCCGGGTCTTCGACCAGACGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGt                  <  1:11608/148‑1 (MQ=255)                                                                                                                                        gcCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCTTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATtc             <  2:37901/149‑1 (MQ=255)                                                                                                                                                ttCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAggg                      <  7:70274/132‑1 (MQ=255)                                                                                                                                                ttCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAggg                      >  8:70274/1‑132 (MQ=255)                                                                                                                                                  cGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAAt     <  3:304149/147‑1 (MQ=255)                                                                                                                                                   GACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGt  >  6:6256‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AGTGTGACGGCGGCGGTGATGGCCAGTGCGGCGAAGGGCTTTTCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGT  >  NC_002947/2343483‑2343777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.