New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2343629 =	44 (0.820)	3 (0.060)	3/256	NT	6.5%	coding (75/249 nt)	PP_2059	hypothetical protein
	?	NC_002947	2343671 =	43 (0.820)					coding (33/249 nt)	PP_2059	hypothetical protein

TCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCAAAGCGACTGTTTGTCACCTGCAGGTCATGCGCGCCG  >  NC_002947/2343525‑2343816                                                                                                                                                   |                                                                                                                                                  attgcgacgaatcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtcttc                                                                                                                                                 >  1:153282‑M1/105‑149 (MQ=255)   cTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTg                                                                                                                                               <  7:313951/149‑1 (MQ=255)       acgaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTac                                                                                                                                           <  2:190842/149‑1 (MQ=255)       acgaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTac                                                                                                                                           <  2:185556/149‑1 (MQ=255)         gaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTacac                                                                                                                                         >  3:283250/1‑149 (MQ=255)         gaacgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGACGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTaca                                                                                                                                          >  1:37901/1‑148 (MQ=255)           acgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCt                                                                                                                                       <  1:304488/149‑1 (MQ=255)           acgaGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCt                                                                                                                                       <  1:308467/149‑1 (MQ=255)            tcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtcttct                                                                                                                                                >  1:165192‑M1/94‑139 (MQ=255)            tcaccgccctaaccctgtgctgttaacccaaagccgctcacaggaaggaactaagccatcatgaaacgcgaacagatcgaaggtgtagcagaaGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGtcttct                                                                                                                                                <  2:165192‑M1/46‑1 (MQ=255)               ggACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGa                                                                                                                                   <  4:77487/149‑1 (MQ=255)                gACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGAt                                                                                                                                  <  4:90520/149‑1 (MQ=255)                   acCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGACTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTg                                                                                                                               >  5:311141/1‑149 (MQ=255)                      gtgtCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTc                                                                                                                            <  5:98490/149‑1 (MQ=255)                           cAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGAt                                                                                                                                  >  8:86661/1‑138 (MQ=255)                           cAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGAt                                                                                                                                  <  7:86661/138‑1 (MQ=255)                             gggTGTCGCCGTAGGTCTTGGTCACCTGGCCTGAGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGttt                                                                                                                      >  4:312239/1‑148 (MQ=255)                               gtgtCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCat                                                                                                                   >  4:315946/1‑149 (MQ=255)                                  tCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCatga                                                                                                                 <  7:287076/148‑1 (MQ=255)                                    gCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATgg                                                                                                              <  8:65412/149‑1 (MQ=255)                                     ccGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGc                                                                                                             >  7:306441/1‑149 (MQ=255)                                      cGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACATTCGATCTGTTCGCGTTTCATGATGGCt                                                                                                            >  1:281768/1‑149 (MQ=255)                                        tAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTa                                                                                                          <  3:315946/149‑1 (MQ=255)                                          ggTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAg                                                                                                         <  3:312239/148‑1 (MQ=255)                                             cTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttc                                                                                                      <  2:69357/148‑1 (MQ=255)                                             cTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttc                                                                                                      >  1:69357/1‑148 (MQ=255)                                              ttGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttcct                                                                                                    >  5:20610/1‑149 (MQ=255)                                                 gTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGttccttc                                                                                                  <  8:139022/148‑1 (MQ=255)                                                  tCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTtccttcct                                                                                                <  7:280039/149‑1 (MQ=255)                                                          ccTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCgg                                                                                        >  1:66712/1‑149 (MQ=255)                                                              cGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCttt                                                                                    <  2:66712/149‑1 (MQ=255)                                                                   tGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGt                                                                                >  5:6256/1‑148 (MQ=255)                                                                           aTCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGca                                                                        >  5:197016/1‑148 (MQ=255)                                                                              gCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAgg                                                                    <  4:283250/149‑1 (MQ=255)                                                                                cTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAggga                                                                  <  8:306441/149‑2 (MQ=255)                                                                                   cGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGtt                                                                 <  1:156405/147‑1 (MQ=255)                                                                                          cAGCGCCGGGTCTTCGACCAGACGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGt                                                         <  1:11608/148‑1 (MQ=255)                                                                                              gcCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCTTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATtc                                                    <  2:37901/149‑1 (MQ=255)                                                                                                     agaagacctggctggcaaggcgcaaagcgccgtaggtcgcctggtcTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGa                                                       <  2:165192‑M2/93‑1 (MQ=255)                                                                                                     agaagacctggctggcaaggcgcaaagcgccgtaggtcgcctggtcTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGa                                                       >  1:165192‑M2/47‑139 (MQ=255)                                                                                                      ttCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAggg                                                             >  8:70274/1‑132 (MQ=255)                                                                                                      ttCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAggg                                                             <  7:70274/132‑1 (MQ=255)                                                                                                      gaagacctggctggcaaggcgcaaagcgccgtaggtcgcctggtcTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAAt                                            >  1:153282‑M2/46‑149 (MQ=255)                                                                                                        cGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAAt                                            <  3:304149/147‑1 (MQ=255)                                                                                                         GACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGt                                         >  6:6256‑M1/1‑149 (MQ=255)                                                                                                          ACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTtccttcct                                                                                                >  7:3267‑M1/1‑93 (MQ=255)                                                                                                          ACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTtccttcct                                                                                                <  8:3267‑M1/93‑1 (MQ=255)                                                                                                             aGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCa                                      >  3:278923/1‑148 (MQ=255)                                                                                                                 gACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATtcgt                                                  >  1:289429/1‑132 (MQ=255)                                                                                                                 gACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATtcgt                                                  <  2:289429/132‑1 (MQ=255)                                                                                                                       cGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCAAAGCGACTGtt                           >  7:52828/1‑149 (MQ=255)                                                                                                                                   ccTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCAAAGCGACTGTTTGTCACCTGCAg               <  6:20610/149‑1 (MQ=255)                                                                                                                                    cTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCAAAGCGACTGTTTGTCACCTGCAgg              <  6:311141/149‑1 (MQ=255)                                                                                                                                                gtcTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCAAAGCGACTGTTTGTCACCTGCAGGTCATGCGCGCCg  >  5:261528‑M2/4‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  TCCTTGACGAACGAGGACACCGTGTCCAGGGTGTCGCCGTAGGTCTTGGTCACCTGGCCTGCGGCCTGACGCGCATCGCCTTCGGCTTCCAGCGCCGGGTCTTCGACCAGGCGACCTACGGCGCTTTGCGCCTTGCCAGCCAGGTCTTCTGCTACACCTTCGATCTGTTCGCGTTTCATGATGGCTTAGTTCCTTCCTGTGAGCGGCTTTGGGTTAACAGCACAGGGTTAGGGCGGTGATTCGTCGCAATGGTTCAAAGCGACTGTTTGTCACCTGCAGGTCATGCGCGCCG  >  NC_002947/2343525‑2343816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.