New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2684111 =	33 (0.610)	3 (0.060)	3/254	NT	7.3%	coding (454/1128 nt)	PP_2352	hypothetical protein
	?	NC_002947	2684194 =	44 (0.850)					coding (371/1128 nt)	PP_2352	hypothetical protein

GTGATACAGCGGGTTGGGCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTATCGGCACGGCCTGGAAA  >  NC_002947/2683965‑2684256                                                                                                                                                   |                                                                                                                                                  gTGATACAGCGGGTTGGGCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCTTGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAagcacagca                                                                                                                                                 >  3:128489/1‑149 (MQ=255) acgcagcttgaacaaggtcaaccgcgcagtctgtacctgtacggctcggtcggccggggtaaaagctggctgctcgatggctttttccaggccgtgccgatagccgccaagctgcgcctgcattttcatgatttctttgcacgcctGc                                                                                                                                                  >  2:89611‑M1/147‑148 (MQ=255)    aTACAGCGGGTTGGGCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCAcc                                                                                                                                               <  6:176554/148‑1 (MQ=255)         gCGGGTTGGGCAAAAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGTCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGTAATTCGTCGAAGCACATCACCCGGCaa                                                                                                                                         >  2:55037/1‑149 (MQ=255)             gTTGGGCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAaccac                                                                                                                                     >  2:298973/1‑149 (MQ=255)                gggCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAAccaccc                                                                                                                                   <  3:111481/148‑1 (MQ=255)                 ggCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAAccacccac                                                                                                                                 <  8:244356/149‑1 (MQ=255)                   cAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACccacca                                                                                                                               >  6:121556/1‑149 (MQ=255)                            ttCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTc                                                                                                                        >  7:29699/1‑147 (MQ=255)                                              ggTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGc                                                                                                                    >  6:15102/1‑133 (MQ=255)                                              ggTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGc                                                                                                                    <  5:15102/133‑1 (MQ=255)                                                  aCCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATACACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCgtcgtc                                                                                                <  5:39194/149‑1 (MQ=255)                                                      gcagGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCTTGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAgc                                                                                            <  4:128489/149‑1 (MQ=255)                                                        agGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAgcgc                                                                                          <  3:23543/149‑1 (MQ=255)                                                             cacGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGt                                                                                     <  8:25498/149‑1 (MQ=255)                                                                  cACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCgg                                                                                >  7:295031/1‑149 (MQ=255)                                                                         gAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGc                                                                         >  5:11438/1‑149 (MQ=255)                                                                               ggCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGt                                                                   <  7:253077/149‑1 (MQ=255)                                                                                   ttGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAg                                                               >  2:43324/1‑149 (MQ=255)                                                                                     ttccaggccgtgccgatagccgccaagctgcgcctgcattttcatgatttctttgcacgcctGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAgg                                                              >  8:296287‑M1/63‑148 (MQ=255)                                                                                      aaCAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCg                                                            >  1:173484/1‑149 (MQ=255)                                                                                       aCAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGt                                                           <  8:241186/149‑1 (MQ=255)                                                                                            cGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCaaa                                                      <  8:295031/149‑1 (MQ=255)                                                                                             cgtgccgatagccgccaagctgcgcctgcattttcatgatttctttgcacgcctGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTg                                                                  <  7:181414‑M1/82‑1 (MQ=255)                                                                                             cgtgccgatagccgccaagctgcgcctgcattttcatgatttctttgcacgcctGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTg                                                                  >  8:181414‑M1/55‑136 (MQ=255)                                                                                                  agcagcATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAAt                                                 <  1:298973/148‑1 (MQ=255)                                                                                                        aTGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGaa                                           >  1:73680/1‑148 (MQ=255)                                                                                                              tCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAg                                    <  8:29699/149‑1 (MQ=255)                                                                                                              tCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAg                                    >  7:152679/1‑149 (MQ=255)                                                                                                                   tATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGaa                                           <  5:276433/137‑1 (MQ=255)                                                                                                                   tATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGaa                                           >  6:276433/1‑137 (MQ=255)                                                                                                                    aTGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAg                              >  3:209982/1‑149 (MQ=255)                                                                                                                       tCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCATCCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGaaa                                          <  1:278785/134‑1 (MQ=255)                                                                                                                       tCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGaaa                                          >  2:278785/1‑134 (MQ=255)                                                                                                                            cACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTggcgg                      <  2:173484/149‑1 (MQ=255)                                                                                                                               gTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTa                   >  6:40876/1‑149 (MQ=255)                                                                                                                                tGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTAt                  <  1:55037/149‑1 (MQ=255)                                                                                                                                tGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACAAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTAt                  >  8:62071/1‑149 (MQ=255)                                                                                                                                    aTTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTATCgg               >  5:326294/1‑148 (MQ=255)                                                                                                                                               cacagcacCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTATCGGCACGGCCTGGa    >  3:179395/1‑148 (MQ=255)                                                                                                                                                acagcacCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTggcgg                      <  6:12651/129‑1 (MQ=255)                                                                                                                                                acagcacCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTggcgg                      >  5:12651/1‑129 (MQ=255)                                                                                                                                                acagcacCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTATCGGCACGGCCTGGaa   >  5:86201/1‑148 (MQ=255)                                                                                                                                                  agcacCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTATCGGCACGGCCTGGaaa  >  4:35063/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GTGATACAGCGGGTTGGGCAACAGCCCTTCGGGCGCGTAGTTAGAGGTCACCAGCAGGTACACGCCACGGGCGAACAAGGCGTTGAACAGCCGGGTGAGCAGCATGGCATCGCCTATGTCATGCACGTGGAATTCGTCGAAGCACAGCACCCGGCAACCACCCACCAGCTCGTCCAGCGTTGCGCCCAGCGCGTCGTCCAGCGCCCGGTGGCGGTGCATGCCCTGGTGCAGGCGTGCAAAGAAATCATGAAAATGCAGGCGCAGCTTGGCGGCTATCGGCACGGCCTGGAAA  >  NC_002947/2683965‑2684256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.