New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2828149 =	36 (0.670)	3 (0.060)	3/258	NT	7.8%	coding (325/1209 nt)	PP_2480	xanthine dehydrogenase accessory factor
	?	NC_002947	2828206 =	36 (0.680)					coding (382/1209 nt)	PP_2480	xanthine dehydrogenase accessory factor

GCGGAAGTGGCGAAAAAGGCTTGGTGGCTGACCGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCTTGATGCCTGGG  >  NC_002947/2828002‑2828289                                                                                                                                                    |                                                                                                                                             ctgcaggtcggcgctgatttgctcaaccagcaccgagcgcagcaactcgcccgcggcctcctgcccaggcatcaagcacaaacgctcgcctaagcgtggcgcagccgcgcccgagctgacgattaccgtggcgatggccgcaggctgct                                                                                                                                             <  3:14823‑M1/2‑1 (MQ=255)             aaaaaGGCTTGGTGGCTGACCGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGccc                                                                                                                                 >  6:101161/1‑149 (MQ=255)               tgatttgctcaaccagcaccgagcgcagcaactcgcccgcggcctcctgcccaggcatcaagcacaaacgctcgcctaagcgtggcgcagccgcgcccgagctgacgattaccgtggcgatggccgcaggctgctg                                                                                                                                            >  4:49968‑M1/134‑136 (MQ=255)               tgatttgctcaaccagcaccgagcgcagcaactcgcccgcggcctcctgcccaggcatcaagcacaaacgctcgcctaagcgtggcgcagccgcgcccgagctgacgattaccgtggcgatggccgcaggctgctg                                                                                                                                            <  3:49968‑M1/3‑1 (MQ=255)                 aGGCTTGGTGGCTGACCGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTgc                                                                                                                             <  6:103749/149‑1 (MQ=255)                            cTGACCGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGa                                                                                                                  <  8:194378/149‑1 (MQ=255)                             tGACCGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGAt                                                                                                                 >  8:164607/1‑149 (MQ=255)                                 cGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCtt                                                                                                             <  5:101161/149‑1 (MQ=255)                                 cGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCtt                                                                                                             >  7:155176/1‑149 (MQ=255)                                 cGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCtt                                                                                                             >  8:57833/1‑149 (MQ=255)                                  gAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCttt                                                                                                            >  5:134897/1‑149 (MQ=255)                                   aaGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCt                                                                                                                                             <  8:176050/115‑1 (MQ=255)                                   aaGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCt                                                                                                                                             >  7:176050/1‑115 (MQ=255)                                   aaGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTg                                                                                                           >  5:105112/1‑149 (MQ=255)                                     gccgggccggCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCt                                                                                                         >  1:192291/1‑149 (MQ=255)                                         ggccggCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGc                                                                                                     <  4:99126/149‑1 (MQ=255)                                            cggCGCTGCGCAGCTACAGCACAGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGACTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGACCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTg                                                                                                  >  8:259997/1‑149 (MQ=255)                                               cgcTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTgcgc                                                                                               <  8:300172/149‑1 (MQ=255)                                                  cccgcggcctcctgcccaggcatcaagcacaaacgctcgcctaagcgtggcgcagccgcgcccgagctgacgattaccgtggcgatggccgcaggctgCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGAc                                                                                            <  1:315698‑M1/51‑1 (MQ=255)                                                         cctcctgcccaggcatcaagcacaaacgctcgcctaagcgtggcgcagccgcgcccgagctgacgattaccgtggcgatggccgcaggctgCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCcagc                                                                                     >  4:315595‑M1/92‑149 (MQ=255)                                                            cAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCcagca                                                                                    <  8:155176/147‑1 (MQ=255)                                                            cAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCcagca                                                                                    <  6:63098/147‑1 (MQ=255)                                                             ctgcccaggcatcaagcacaaacgctcgcctaagcgtggcgcagccgcgcccgagctgacgattaccgtggcgatggccgcaggctgCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCcagcag                                                                                   >  2:315698‑M1/88‑147 (MQ=255)                                                             aGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGcc                                                                                 >  5:138958/1‑149 (MQ=255)                                                                aCCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCcagc                                                                                     >  4:236959/1‑142 (MQ=255)                                                                aCCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCcagc                                                                                     <  3:236959/142‑1 (MQ=255)                                                                  cGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCgg                                                                            <  6:105112/149‑1 (MQ=255)                                                                     agagGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCa                                                                         >  8:196348/1‑149 (MQ=255)                                                                              tGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACgg                                                                <  7:204556/149‑1 (MQ=255)                                                                                  gCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAAt                                                            <  7:164607/149‑1 (MQ=255)                                                                                      gCGAGGAAGCCCTGAGCGTCGGCCTGGGCGGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTc                                                        <  8:129679/149‑1 (MQ=255)                                                                                                ccTGAGCTTCGGCCTCGGCTGTAACGGCAACGTTCACCTGCTGTTCGAGCGCCTGCCCGCCCGCCCTTGCGCCTTGGTCGATGCATTGCTCAGCGTGCGAGACCGCCAGCAGCCTGCTGCCATCCCCACGGTAATCGTCAGCTCGGgcg                                              >  6:147967/2‑149 (MQ=255)                                                                                                        tCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTgcg                                      >  7:176707/1‑149 (MQ=255)                                                                                                          ggCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGcc                                    <  6:138958/149‑1 (MQ=255)                                                                                                                ggCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCTACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGc                                <  7:259997/147‑1 (MQ=255)                                                                                                                   tGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAgg                           >  6:98978/1‑149 (MQ=255)                                                                                                                     tAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGc                          <  6:134897/148‑1 (MQ=255)                                                                                                                            aaGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGttt                  >  4:143989/1‑149 (MQ=255)                                                                                                                              ggTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTTCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTtgt                >  7:50515/1‑149 (MQ=255)                                                                                                                                 tCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCt             >  7:287372/1‑149 (MQ=255)                                                                                                                                  cACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCt             <  7:196348/148‑1 (MQ=255)                                                                                                                                         tGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCTTGATGCCt     >  2:79610/1‑149 (MQ=255)                                                                                                                                          gTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCTTGATGCCTg    >  4:41907/1‑149 (MQ=255)                                                                                                                                             cGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCTTGATGCCTggg  >  7:30443/1‑148 (MQ=255)                                                                                                                                                    CTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTgcgc                                     >  8:208394‑M1/1‑106 (MQ=255)                                                                                                                                                    |                                                                                                                                             GCGGAAGTGGCGAAAAAGGCTTGGTGGCTGACCGAAGCCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTCGGGCGCGGCTGCGCCACGCTTAGGCGAGCGTTTGTGCTTGATGCCTGGG  >  NC_002947/2828002‑2828289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.