New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3005550	35 (0.650)	4 (0.080)	3/248	NT	9.9%	coding (2131/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005581	40 (0.790)					coding (2162/3621 nt)	PP_2627	membrane protein

GGTCAGCGAAGTGCAGCAGGCGCTGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGAGCGCAGTCAACT  >  NC_002947/3005402‑3005698                                                                                                                                                      |                                                                                                                                                     ggTCAGCGAAGTGCAGCAGGCGCTGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGT                                                                                                                                                      <  1:319742‑M1/149‑1 (MQ=255)  gTCAGCGAAGTGCAGCAGGCGCTGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTc                                                                                                                                                     >  4:288362/1‑149 (MQ=255)          aGTGCAGCAGGCGCTGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCGCCCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCggg                                                                                                                                              <  1:250415/149‑1 (MQ=255)                     cgcTGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAggg                                                                                                                                  >  1:53031/1‑149 (MQ=255)                        tGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGAt                                                                                                                               >  6:277288/1‑149 (MQ=255)                             aaaTTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAgggg                                                                                                                                 <  6:286043/142‑1 (MQ=255)                             aaaTTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAgggg                                                                                                                                 >  5:286043/1‑142 (MQ=255)                                  gCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTac                                                                                                                     <  7:268726‑M2/149‑3 (MQ=255)                                    cGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGCTGATGAGGATGTacgg                                                                                                                   <  7:284123‑M2/149‑5 (MQ=255)                                         ccACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCCCGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTacatcctcatccccttgcctggccccggaagacggctgg                                                                                                               <  1:167686‑M1/148‑40 (MQ=255)                                         ccACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTacatcctcatccccttgcctggccccggaagacggctgg                                                                                                               <  1:162488‑M1/148‑40 (MQ=255)                                            caGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGgccgc                                                                                                           >  1:289328/1‑149 (MQ=255)                                              gCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCa                                                                                                         <  2:25659/149‑1 (MQ=255)                                                     tATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGTCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCAc                                                                                                  >  3:215521/1‑149 (MQ=255)                                                             gCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTacatcctcatccccttgcctggccccggaagacggc                                                                                                                  >  6:148950‑M1/1‑89 (MQ=255)                                                             gCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTacatcctcatccccttgcctggccccggaagacggc                                                                                                                  <  5:148950‑M1/125‑37 (MQ=255)                                                             gCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAg                                                                                          <  5:277288/149‑1 (MQ=255)                                                                 aaaCAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCtt                                                                                      <  3:123957/149‑1 (MQ=255)                                                                   acaacaATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCa                                                                                    <  8:268726/149‑1 (MQ=255)                                                                     aacaaTCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAgg                                                                                  >  5:44555/1‑149 (MQ=255)                                                                     aacaaTCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAgg                                                                                  >  5:274472/1‑149 (MQ=255)                                                                               ccAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGTGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGaa                                                                               <  8:269480/142‑1 (MQ=255)                                                                               ccAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATagctcg                                                                        >  7:269480/1‑144 (MQ=255)                                                                                cagcagTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTc                                                                         >  3:194755/1‑147 (MQ=255)                                                                                  gcagTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGc                                                                     >  7:259747/1‑149 (MQ=255)                                                                                   cagTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGcc                                                                    <  6:44555/149‑1 (MQ=255)                                                                                              cGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAAc                                                         >  4:303381/1‑149 (MQ=255)                                                                                                 gCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCt                                                      >  6:175133/1‑149 (MQ=255)                                                                                                      aCCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCt                                                 <  3:288362/149‑1 (MQ=255)                                                                                                       ccTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCt                                                 >  1:262052/1‑148 (MQ=255)                                                                                                              cccccaGGTAGGGCCTGCGTTCGATGGGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCCCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATgg                                          <  4:84642/146‑1 (MQ=255)                                                                                                              ccaccaGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATgg                                          <  2:289328/149‑1 (MQ=255)                                                                                                               caccaGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGc                                         <  3:303381/149‑1 (MQ=255)                                                                                                                    ggTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATgg                                    <  2:53031/149‑1 (MQ=255)                                                                                                                            cTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCg                                                                   <  3:166794/110‑1 (MQ=255)                                                                                                                            cTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCg                                                                   >  4:166794/1‑110 (MQ=255)                                                                                                                                   cGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCAt                     >  3:180739/1‑149 (MQ=255)                                                                                                                                      tgtgGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTgg                  >  6:285477/1‑149 (MQ=255)                                                                                                                                          gtgtACCAGTCGTCTTCCGGGGCCAGGCACGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGa              <  4:215521/149‑1 (MQ=255)                                                                                                                                          gtgtACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGa              <  5:285477/149‑1 (MQ=255)                                                                                                                                           tgtACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTggggg               >  3:125069/1‑147 (MQ=255)                                                                                                                                           tgtACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTggggg               <  4:125069/147‑1 (MQ=255)                                                                                                                                              aCCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGAgcg           >  6:74328/1‑148 (MQ=255)                                                                                                                                               ccAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTacggctggtacaccacatcgaacgcaggccctacctggtggcgcaggtccagcccggcgtgcaactgctggtacgattgttgtttcagccctgcatagacccgctgtgg          <  1:162488‑M2/148‑110 (MQ=255)                                                                                                                                               ccAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTacggctggtacaccacatcgaacgcaggccctacctggtggcgcaggtccagcccggcgggcaactgctggtacgattgttgtttcagccctgcatagacccgctgtgg          <  1:167686‑M2/148‑110 (MQ=255)                                                                                                                                                  gCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTacggctggtacaccacatcgaacgcaggccctacctggtggcgcaggtccagcccggcgtgcaactgctggtacgattgttgtttcagc                              >  6:148950‑M2/1‑36 (MQ=255)                                                                                                                                                  gCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTacggctggtacaccacatcgaacgcaggccctacctggtggcgcaggtccagcccggcgtgcaactgctggtacgattgttgtttcagc                              <  5:148950‑M2/125‑90 (MQ=255)                                                                                                                                                  gCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGAGCGCAGTc      <  6:274472/149‑1 (MQ=255)                                                                                                                                                   ccGTacatcctcatcagcttgcctggccccggaagacggctggtacaccacatcgaacgcaggccctacctggtggcgcaggtccagcccggcgtgcaactgctggtacgattgttgtttcagccctgcatagacccgctgtggcaacg     <  7:284123‑M1/149‑146 (MQ=255)                                                                                                                                                    cGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGAGCGCAGTCaa    <  8:259747/149‑1 (MQ=255)                                                                                                                                                     gTacatcctcatccccttgcctggccccggaagacggctggtacaccacatcgaacgcaggccctacctggtggcgcaggtccagcccggcgtgcaactgctggtacgattgttgtttcagccctgcatagacccgctgtggcaacggc   <  7:268726‑M1/149‑148 (MQ=255)                                                                                                                                                      tCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGAGCGCAGTCAACt  >  6:202329/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGTCAGCGAAGTGCAGCAGGCGCTGCGCAAATTGCCGTTGCCACAGCGGGTCTATGCAGGGCTGAAACAACAATCGTACCAGCAGTTGCACGCCGGGCTGGACCTGCG‑CCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGGCCAGGCAAGGGGATGAGGATGTACGGCTGGCCGCCATGCTCACCGCCAAAGGCTTCAGGGAATACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGCGATGGTTGATCAATGGGCATTGGGGGAGCGCAGTCAACT  >  NC_002947/3005402‑3005698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.