New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3555324	40 (0.740)	3 (0.060)	3/250	NT	7.2%	coding (940/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	= 3555357	39 (0.770)					coding (973/1203 nt)	PP_3139	group 1 family glycosyl transferase

GATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCG  >  NC_002947/3555182‑3555470                                                                                                                                                |                                                                                                                                                   gATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATgg                                                                                                                                              <  7:271034/149‑1 (MQ=255)   tCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAg                                                                                                                                            >  8:232736/1‑149 (MQ=255)        gCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCAt                                                                                                                                       >  6:13671/1‑149 (MQ=255)        gCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCACCGAGGGCTTGCCCGTGGTCATCATGGAGGCCAt                                                                                                                                       >  5:69641/1‑149 (MQ=255)          cTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATgg                                                                                                                                     <  7:314334/149‑1 (MQ=255)           ttGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGc                                                                                                                                    >  4:143833/1‑149 (MQ=255)               ttGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTg                                                                                                                                <  5:138844/149‑1 (MQ=255)                   ccGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGcc                                                                                                                            >  3:202642/1‑149 (MQ=255)                     ggCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCgg                                                                                                                          >  2:18896/1‑149 (MQ=255)                     ggCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCgg                                                                                                                          <  2:58347/149‑1 (MQ=255)                      gCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGc                                                                                                                         <  7:238398/149‑1 (MQ=255)                               gcagcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtga                                                                                                                <  5:334087‑M2/149‑4 (MQ=255)                               gcagcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCACCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtg                                                                                                                 >  6:69641‑M2/1‑146 (MQ=255)                                 agcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgac                                                                                                               <  2:183293‑M2/148‑5 (MQ=255)                                  gcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgacca                                                                                                             >  5:126034‑M2/1‑143 (MQ=255)                                    agcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCAgcacgggccggcgcaaggccatggcctccatgatgaccacg                                                                                                           <  8:290221‑M1/149‑42 (MQ=255)                                        aGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATg                                                                                                       <  1:18896/149‑1 (MQ=255)                                             gTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCAgcacgggccggcgcaaggccatggcctccatgatgac                                                                                                               >  4:260305‑M1/1‑99 (MQ=255)                                             gTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCAgcacgggccggcgcaaggccatggcctccatgatgac                                                                                                               <  3:260305‑M1/136‑38 (MQ=255)                                              tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                 <  4:202642/149‑1 (MQ=255)                                              tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                 <  2:9464/149‑1 (MQ=255)                                              tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                 >  5:140165/1‑149 (MQ=255)                                                tCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGc                                                                                                                                    <  8:277834/112‑1 (MQ=255)                                                tCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGc                                                                                                                                    >  7:277834/1‑112 (MQ=255)                                                   ctggctggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTAt                                                                                             >  6:230917/1‑148 (MQ=255)                                                   ctggctggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTAt                                                                                             <  5:230917/148‑1 (MQ=255)                                                       ctggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCg                                                                                        <  7:229318/149‑1 (MQ=255)                                                        tggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGa                                                                                       <  3:40031/149‑1 (MQ=255)                                                         atccagccagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAg                                                                                      >  7:270499/8‑149 (MQ=255)                                                          gATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTTATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGa                                                                                       <  1:166368/147‑1 (MQ=255)                                                               gcagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCGGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGt                                                                                 <  3:276470/148‑1 (MQ=255)                                                                cagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGc                                                                               <  7:232736/149‑1 (MQ=255)                                                                      gcAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTg                                                                         <  8:270499/149‑1 (MQ=255)                                                                        aGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGGGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGc                                                                       <  5:35005/149‑1 (MQ=255)                                                                                   gAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTGTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggct                                                             >  1:60900/1‑149 (MQ=255)                                                                                   gAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggctg                                                            <  6:334087/149‑1 (MQ=255)                                                                                      aTCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggctggct                                                         >  3:321509/1‑149 (MQ=255)                                                                                       tCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGgctggctg                                                        >  8:55880/1‑149 (MQ=255)                                                                                               gccCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGc                                                <  2:60900/149‑1 (MQ=255)                                                                                                 ccGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCg                                              >  2:98271/1‑149 (MQ=255)                                                                                                         tGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTg                                      >  8:275953/1‑149 (MQ=255)                                                                                                            tGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGAc                                   <  3:143833/149‑1 (MQ=255)                                                                                                                aCCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGt                               >  4:87850/1‑149 (MQ=255)                                                                                                                    aGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTgg                            >  4:2848/1‑148 (MQ=255)                                                                                                                                      gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCCGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACt          >  5:191333/1‑149 (MQ=255)                                                                                                                                      gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGAc           <  5:13671/148‑1 (MQ=255)                                                                                                                                         cGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatacgcacttgct       <  8:290221‑M2/149‑109 (MQ=255)                                                                                                                                         cGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGcc       >  7:36340/1‑149 (MQ=255)                                                                                                                                           tGGTCAgcacgggccggcgcaaggccatggcctccatgatgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatacgcacttgctgc     >  5:126034‑M1/1‑6 (MQ=255)                                                                                                                                             gTCAgcacgggccggcgcaaggccatggcctccatgatgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatacgcacttgctgct    <  2:183293‑M1/148‑145 (MQ=255)                                                                                                                                             gTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatac                >  4:260305‑M2/1‑37 (MQ=255)                                                                                                                                             gTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatac                <  3:260305‑M2/136‑100 (MQ=255)                                                                                                                                             gTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGgc   <  3:87850/149‑1 (MQ=255)                                                                                                                                              tCAgcacgggccggcgcaaggccatggcctccatgatgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatacgcacttgctgctgc  <  5:334087‑M1/149‑147 (MQ=255)                                                                                                                                               cAgcacgggccggcgcaaggccatggcctccatgatgaccacgggcaagccctcggtgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatacgcacttgctgctgc  >  6:69641‑M1/1‑2 (MQ=255)                                                                                                                                                |                                                                                                                                                   GATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCG  >  NC_002947/3555182‑3555470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.