New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3555324	40 (0.740)	3 (0.060)	3/250	NT	7.2%	coding (940/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	= 3555357	39 (0.770)					coding (973/1203 nt)	PP_3139	group 1 family glycosyl transferase

GCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGG  >  NC_002947/3555212‑3555498                                                                                                                                                   |                                                                                                                                               gcagcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtga                                                                                                                                             <  5:334087‑M2/149‑4 (MQ=255) gcagcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCACCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtg                                                                                                                                              >  6:69641‑M2/1‑146 (MQ=255)   agcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgac                                                                                                                                            <  2:183293‑M2/148‑5 (MQ=255)    gcagcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgacca                                                                                                                                          >  5:126034‑M2/1‑143 (MQ=255)          aGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATg                                                                                                                                    <  1:18896/149‑1 (MQ=255)                tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                                              <  2:9464/149‑1 (MQ=255)                tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                                              >  5:140165/1‑149 (MQ=255)                tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                                              <  4:202642/149‑1 (MQ=255)                     ctggctggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTAt                                                                                                                          >  6:230917/1‑148 (MQ=255)                     ctggctggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTAt                                                                                                                          <  5:230917/148‑1 (MQ=255)                         ctggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCg                                                                                                                     <  7:229318/149‑1 (MQ=255)                          tggATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGa                                                                                                                    <  3:40031/149‑1 (MQ=255)                           atccagccagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAg                                                                                                                   >  7:270499/8‑149 (MQ=255)                            gATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTTATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGa                                                                                                                    <  1:166368/147‑1 (MQ=255)                                 gcagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCGGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGt                                                                                                              <  3:276470/148‑1 (MQ=255)                                  cagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGc                                                                                                            <  7:232736/149‑1 (MQ=255)                                        gcAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTg                                                                                                      <  8:270499/149‑1 (MQ=255)                                          aGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGGGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGc                                                                                                    <  5:35005/149‑1 (MQ=255)                                                     gAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTGTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACgg‑ct                                                                                         >  1:60900/1‑149 (MQ=255)                                                     gAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACgg‑ctg                                                                                        <  6:334087/149‑1 (MQ=255)                                                        aTCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACgg‑ctggct                                                                                     >  3:321509/1‑149 (MQ=255)                                                         tCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGg‑ctggctg                                                                                    >  8:55880/1‑149 (MQ=255)                                                                 gccCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGc                                                                            <  2:60900/149‑1 (MQ=255)                                                                   ccGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCg                                                                          >  2:98271/1‑149 (MQ=255)                                                                           tGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTg                                                                  >  8:275953/1‑149 (MQ=255)                                                                              tGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGAc                                                               <  3:143833/149‑1 (MQ=255)                                                                                  aCCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGt                                                           >  4:87850/1‑149 (MQ=255)                                                                                      aGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTgg                                                        >  4:2848/1‑148 (MQ=255)                                                                                                        gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCCGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACt                                      >  5:191333/1‑149 (MQ=255)                                                                                                        gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGAc                                       <  5:13671/148‑1 (MQ=255)                                                                                                           cGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatacgcacttgct                                    <  8:290221‑M2/149‑109 (MQ=255)                                                                                                           cGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGcc                                   >  7:36340/1‑149 (MQ=255)                                                                                                               gTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatac                                             <  3:260305‑M2/136‑100 (MQ=255)                                                                                                               gTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCtgaccacgggcaagccctcggcgaagctgggtagcaccagcgcacgggcggccaggatttcctcgcgtacctgcgcactgctgatccagccagtgatac                                             >  4:260305‑M2/1‑37 (MQ=255)                                                                                                               gTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGgc                               <  3:87850/149‑1 (MQ=255)                                                                                                                taataatGGCGGCCATGGGCTTGCGCCGGGCCGGGCGGTCCACCTATTTTGGGGGTATCCCCGTGCGGGTGGGGCCTGGCGAAAACGGCCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGgc                               <  1:98271/144‑1 (MQ=255)                                                                                                                            ccATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGCCCGACTGCCTGGCGCAACCGGCCGAg                  <  1:183293/149‑1 (MQ=255)                                                                                                                             cATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATg                                             <  7:314910/121‑1 (MQ=255)                                                                                                                             cATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATg                                             >  8:314910/1‑121 (MQ=255)                                                                                                                             cATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAgg                 >  4:197822/1‑149 (MQ=255)                                                                                                                                        gcCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAg                                                            >  4:47486/1‑95 (MQ=255)                                                                                                                                        gcCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAg                                                            <  3:47486/95‑1 (MQ=255)                                                                                                                                         ccGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCa     >  4:320182/1‑149 (MQ=255)                                                                                                                                         ccGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCa     >  3:167148/1‑149 (MQ=255)                                                                                                                                            gCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATgg  <  6:191333/149‑1 (MQ=255)                                                                                                                                            gCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATgg  <  4:167148/149‑1 (MQ=255)                                                                                                                                            gCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATgg  >  3:45826/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                               GCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCT‑TCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGG‑CTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGG  >  NC_002947/3555212‑3555498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.