New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3613444 =	47 (0.870)	4 (0.080)	4/256	NT	7.1%	coding (240/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613484 =	59 (1.130)					coding (200/3396 nt)	mcoA	Mn(II) copper oxidase A

AATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCA  >  NC_002947/3613298‑3613589                                                                                                                                                   |                                                                                                                                                  gtcactgcactgatgatcagcctcgggttgatcacggccatggactctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGc                                                                                                                                                  <  1:64749‑M1/2‑1 (MQ=255)                 acagtTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAg                                                                                                                                  <  7:167779/148‑1 (MQ=255)                     ttGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGc                                                                                                                             >  7:159439/1‑149 (MQ=255)                        cgggttgatcacggccatggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCtt                                                                                                                          <  4:250204‑M1/26‑1 (MQ=255)                         tGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTc                                                                                                                         >  4:47870/1‑149 (MQ=255)                          gggTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTTCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCg                                                                                                                        >  2:254207/1‑149 (MQ=255)                            gTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTTGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGtt                                                                                                                      <  1:98595/149‑1 (MQ=255)                             tGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTg                                                                                                                     <  2:163362/149‑1 (MQ=255)                             tGAATGGTTCCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGGCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTg                                                                                                                     <  6:221426/149‑1 (MQ=255)                                aTGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGc                                                                                                                   <  5:219071/148‑1 (MQ=255)                                    ttGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTg                                                                                                              >  6:293275/1‑149 (MQ=255)                                      ccatggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTgg                                                                                                             <  3:188548‑M1/39‑1 (MQ=255)                                       catggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCa                                                                                                           >  3:250204‑M1/109‑149 (MQ=255)                                        gcACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCAt                                                                                                          <  5:293275/149‑1 (MQ=255)                                         cACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                         <  8:159439/149‑1 (MQ=255)                                         cACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                         <  1:281240/149‑1 (MQ=255)                                             ctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGgtgt                                                                                                     >  4:188548‑M1/103‑149 (MQ=255)                                               acaacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTc                                                                                                   <  8:144714/149‑1 (MQ=255)                                                      gCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaa                                                                                            <  6:178668/149‑1 (MQ=255)                                                      gCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaa                                                                                            <  3:47870/149‑1 (MQ=255)                                                        tGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaag                                                                                           >  4:196952/1‑148 (MQ=255)                                                        tGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaag                                                                                           >  4:74813/1‑148 (MQ=255)                                                          ggTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTTCGGTCGCCATACACGCCATCGGCCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaagcaa                                                                                        <  1:254207/149‑1 (MQ=255)                                                          ggTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaagcaa                                                                                        <  6:32632/149‑1 (MQ=255)                                                           gTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaagcaag                                                                                       >  8:294977/1‑149 (MQ=255)                                                           gTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaagcaag                                                                                       <  6:239447/149‑1 (MQ=255)                                                                   ttGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGt                                                                               <  7:294977/149‑1 (MQ=255)                                                                             aCTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCgg                                                                            >  6:61954/1‑142 (MQ=255)                                                                             aCTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCgg                                                                            <  5:61954/142‑1 (MQ=255)                                                                               ttGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaa                                                                                            >  6:218953/1‑124 (MQ=255)                                                                               ttGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaa                                                                                            <  5:218953/124‑1 (MQ=255)                                                                                 gTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCt                                                                 >  1:156448/1‑149 (MQ=255)                                                                                  tCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCggg                                                                           >  4:324785/1‑138 (MQ=255)                                                                                  tCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCggg                                                                           <  3:324785/138‑1 (MQ=255)                                                                                  tCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGCTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTg                                                                >  5:274386/1‑149 (MQ=255)                                                                                    cGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGt                                                              >  1:34834/1‑149 (MQ=255)                                                                                         tttGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGgtg                                                         >  4:59333/1‑149 (MQ=255)                                                                                            gcagggtaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAg                                                      >  7:87209/1‑149 (MQ=255)                                                                                             cagggcaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAgg                                                     <  3:74813/149‑1 (MQ=255)                                                                                             cagggcaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAg                                                      <  3:196952/148‑1 (MQ=255)                                                                                                        gcagcaCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCg                                          >  4:54041/1‑149 (MQ=255)                                                                                                            caCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGACTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTg                                      >  3:188388/1‑149 (MQ=255)                                                                                                              cGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGc                                    >  5:69018/1‑149 (MQ=255)                                                                                                                     ggTGCGGACTTTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGc                              <  8:87209/148‑1 (MQ=255)                                                                                                                      gTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCAt                            >  8:144060/1‑149 (MQ=255)                                                                                                                            aCTGTGTTGCGGTCGCCATAGAGGCCAGCGGTCAACTCCCGCGAGGCTTCGTTGGCCTCTGGCATGGTTTTCAGCTGAAGCAATGCAGACGTCGGGGCGTCCGGCTGGTCGGGGTAGGCCGTCGGGTCGGTTGTCGTGGGCATGCtgtt                      <  8:68148/149‑1 (MQ=255)                                                                                                                            aCTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCCGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCtgtt                      <  7:144060/149‑1 (MQ=255)                                                                                                                             cTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCtgttg                     <  2:156448/149‑1 (MQ=255)                                                                                                                              tgtgTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCgggt                                <  6:257795/137‑2 (MQ=255)                                                                                                                              tgtgTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCgggt                                >  5:257795/1‑136 (MQ=255)                                                                                                                                tgtTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTgtcg                  >  1:105118/1‑149 (MQ=255)                                                                                                                                tgtTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGACTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTgtc                   <  4:188388/148‑1 (MQ=255)                                                                                                                                                cacGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCa  >  4:210655/1‑149 (MQ=255)                                                                                                                                                   GCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCtgtt                      >  7:249315‑M1/1‑126 (MQ=255)                                                                                                                                                   GCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCtgtt                      <  8:249315‑M1/126‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  AATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCA  >  NC_002947/3613298‑3613589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.