New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3957090 =	46 (0.850)	3 (0.060)	3/252	NT	6.7%	coding (3295/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3957124 =	39 (0.760)					coding (3261/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

GACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAG  >  NC_002947/3956942‑3957231                                                                                                                                                     |                                                                                                                                              gACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTg                                                                                                                                               >  2:79294/1‑149 (MQ=255)   tcgaccgtggcctgggtaccatcttcacccatgaccaccttggcccatcgacccaccagcaactgggcctgtatgccaccgtgctggccgaaccggccggttccacctggtaccacgccgaaaccggcgagcagctgtacaacccgGc                                                                                                                                              <  4:165181‑M1/2‑1 (MQ=255)    tGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGGACTCGCGGTAGCTGTCGTTCTTGCCGTCACCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCa                                                                                                                                            >  3:247345/1‑149 (MQ=255)        cATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAg                                                                                                                                        >  1:303815/1‑149 (MQ=255)            gggAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTc                                                                                                                                     <  8:46741/148‑1 (MQ=255)                 tGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGgccg                                                                                                                               >  3:9360/1‑149 (MQ=255)                   ccGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGgccgc                                                                                                                              <  1:79294/148‑1 (MQ=255)                    cGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGccgccg                                                                                                                            >  4:253825/1‑149 (MQ=255)                     gTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGt                                                                                                                           <  5:19640/149‑1 (MQ=255)                        cGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTcc                                                                                                                         <  6:20931/148‑1 (MQ=255)                                      cGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGGACTCGCGGTAGCTGTCGTTCTTGCCGTCACCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCggg                                                                                                          <  4:247345/149‑1 (MQ=255)                                          ttggcccatcgacccaccagcaactgggcctgtatgccaccgtgctggccgaaccggccggttccacctggtaccacgccgaaaccggcgagcagctgtacaacccgGc                                                                                                                                              >  5:71171‑M1/108‑109 (MQ=255)                                          ttggcccatcgacccaccagcaactgggcctgtatgccaccgtgctggccgaaccggccggttccacctggtaccacgccgaaaccggcgagcagctgtacaacccgGc                                                                                                                                              <  6:71171‑M1/2‑1 (MQ=255)                                           acCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTa                                                                                                     <  2:55204/149‑1 (MQ=255)                                            ccccAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTAc                                                                                                    <  3:313913/149‑1 (MQ=255)                                              cccatcgacccaccagcaactgggcctgtatgccaccgtgctggccgaaccggccggttccacctggtaccacgccgaaaccggcgagcagctgtacaacccgGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAg                                                                                                  >  3:32958‑M1/104‑149 (MQ=255)                                                   ttCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAgctgct                                                                                             >  3:226589/1‑149 (MQ=255)                                                     cATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCg                                                                                           >  1:211667/1‑149 (MQ=255)                                                          gCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTc                                                                                            <  5:218586/143‑1 (MQ=255)                                                          gCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTc                                                                                            >  6:218586/1‑143 (MQ=255)                                                              gCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGTCGTCCTGGCGCGTGGCCGGGTTGTACAg                                                                                                  <  1:19330/133‑1 (MQ=255)                                                              gCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAg                                                                                                  >  2:19330/1‑133 (MQ=255)                                                                tGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGc                                                                                >  5:55302/1‑149 (MQ=255)                                                                  gAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGc                                                                                <  4:226589/147‑1 (MQ=255)                                                                  gAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGt                                                                              <  6:58637/149‑1 (MQ=255)                                                                            tACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAgg                                                                     <  3:119289/148‑1 (MQ=255)                                                                             aCTCCAGGAAGAACTCGCGGTTGGTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGt                                                                    <  7:150694/148‑1 (MQ=255)                                                                               tCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTgg                                                                  >  5:148639/1‑148 (MQ=255)                                                                                 cAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAc                                                               >  6:228640/1‑149 (MQ=255)                                                                                  aGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAcc                                                              >  8:209111/1‑149 (MQ=255)                                                                                    gaagaaCTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAccgg                                                            >  5:227109/1‑149 (MQ=255)                                                                                        aaCTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAccggccgg                                                        >  3:95398/1‑149 (MQ=255)                                                                                               ggTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGc                                                  >  4:183672/1‑148 (MQ=255)                                                                                                gTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGc                                                  >  7:275437/1‑147 (MQ=255)                                                                                                             ttGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATa                                   >  7:263169/1‑149 (MQ=255)                                                                                                               gCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATa                                   >  8:311404/1‑147 (MQ=255)                                                                                                                   ccacgccgaaaccggcgagcagctgtacaacccgGCCACGAGGTCGGGCCGCCGTCCTGgc                                                                                                                     >  4:152940‑M1/35‑61 (MQ=255)                                                                                                                   ccacgccgaaaccggcgagcagctgtacaacccgGCCACGAGGTCGGGCCGCCGTCCTGgc                                                                                                                     <  3:152940‑M1/27‑1 (MQ=255)                                                                                                                     gCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGcc                             >  1:128460/1‑147 (MQ=255)                                                                                                                     gCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCa                           <  6:148639/149‑1 (MQ=255)                                                                                                                      ccATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAg                          <  1:230616/149‑1 (MQ=255)                                                                                                                        aTCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGtt                        <  8:263169/149‑1 (MQ=255)                                                                                                                              gTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCtggt                  <  6:227109/149‑1 (MQ=255)                                                                                                                              gTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCtggt                  <  3:253825/149‑1 (MQ=255)                                                                                                                              gTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCtgg                   <  2:211667/148‑1 (MQ=255)                                                                                                                                  ccGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTGCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGt              <  5:228640/149‑1 (MQ=255)                                                                                                                                   cGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTAGTGGGTc             >  1:295233/1‑149 (MQ=255)                                                                                                                                      tCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGAt          <  7:311404/149‑1 (MQ=255)                                                                                                                                       cTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGcc                             >  7:155150/1‑129 (MQ=255)                                                                                                                                       cTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGcc                             <  8:155150/129‑1 (MQ=255)                                                                                                                                          gATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGc      >  3:165181/1‑149 (MQ=255)                                                                                                                                           aTCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTg                                        >  8:239958/1‑114 (MQ=255)                                                                                                                                           aTCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTg                                        <  7:239958/114‑1 (MQ=255)                                                                                                                                              aCCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTAGTGGGTCGATGGGCCAAg  <  2:295233/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              GACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAG  >  NC_002947/3956942‑3957231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.