New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3957090 =	46 (0.850)	3 (0.060)	3/252	NT	6.7%	coding (3295/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3957124 =	39 (0.760)					coding (3261/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

CGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATGGGTGAAGATGGTACCCAGGCCACGGTCGACGT  >  NC_002947/3956979‑3957272                                                                                                                                                  |                                                                                                                                                     cGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGGACTCGCGGTAGCTGTCGTTCTTGCCGTCACCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCggg                                                                                                                                                   <  4:247345/149‑1 (MQ=255)      acCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTa                                                                                                                                              <  2:55204/149‑1 (MQ=255)       ccccAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTAc                                                                                                                                             <  3:313913/149‑1 (MQ=255)         cccatcgacccaccagcaactgggcctgtatgccaccgtgctggccgaaccggccggttccacctggtaccacgccgaaaccggcgagcagctgtacaacccgGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAg                                                                                                                                           >  3:32958‑M1/104‑149 (MQ=255)              ttCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAgctgct                                                                                                                                      >  3:226589/1‑149 (MQ=255)                cATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCg                                                                                                                                    >  1:211667/1‑149 (MQ=255)                     gCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTc                                                                                                                                     >  6:218586/1‑143 (MQ=255)                     gCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTc                                                                                                                                     <  5:218586/143‑1 (MQ=255)                         gCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGTCGTCCTGGCGCGTGGCCGGGTTGTACAg                                                                                                                                           <  1:19330/133‑1 (MQ=255)                         gCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAg                                                                                                                                           >  2:19330/1‑133 (MQ=255)                           tGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGc                                                                                                                         >  5:55302/1‑149 (MQ=255)                             gAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGc                                                                                                                         <  4:226589/147‑1 (MQ=255)                             gAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGt                                                                                                                       <  6:58637/149‑1 (MQ=255)                                       tACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAgg                                                                                                              <  3:119289/148‑1 (MQ=255)                                        aCTCCAGGAAGAACTCGCGGTTGGTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGt                                                                                                             <  7:150694/148‑1 (MQ=255)                                          tCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTgg                                                                                                           >  5:148639/1‑148 (MQ=255)                                            cAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAc                                                                                                        >  6:228640/1‑149 (MQ=255)                                             aGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAcc                                                                                                       >  8:209111/1‑149 (MQ=255)                                               gaagaaCTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAccgg                                                                                                     >  5:227109/1‑149 (MQ=255)                                                   aaCTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAAccggccgg                                                                                                 >  3:95398/1‑149 (MQ=255)                                                          ggTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGc                                                                                           >  4:183672/1‑148 (MQ=255)                                                           gTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGc                                                                                           >  7:275437/1‑147 (MQ=255)                                                                        ttGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATa                                                                            >  7:263169/1‑149 (MQ=255)                                                                          gCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATa                                                                            >  8:311404/1‑147 (MQ=255)                                                                                gCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGcc                                                                      >  1:128460/1‑147 (MQ=255)                                                                                gCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCa                                                                    <  6:148639/149‑1 (MQ=255)                                                                                 ccATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAg                                                                   <  1:230616/149‑1 (MQ=255)                                                                                   aTCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGtt                                                                 <  8:263169/149‑1 (MQ=255)                                                                                         gTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCtggt                                                           <  3:253825/149‑1 (MQ=255)                                                                                         gTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCtggt                                                           <  6:227109/149‑1 (MQ=255)                                                                                         gTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCtgg                                                            <  2:211667/148‑1 (MQ=255)                                                                                             ccGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTGCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGt                                                       <  5:228640/149‑1 (MQ=255)                                                                                              cGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTAGTGGGTc                                                      >  1:295233/1‑149 (MQ=255)                                                                                                 tCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGAt                                                   <  7:311404/149‑1 (MQ=255)                                                                                                  cTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGcc                                                                      <  8:155150/129‑1 (MQ=255)                                                                                                  cTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGcc                                                                      >  7:155150/1‑129 (MQ=255)                                                                                                    ctgtacaacccggccacgcgccaggacggcggcccgacctcgtggcCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATggg                                                >  3:32958‑M2/47‑149 (MQ=255)                                                                                                     gATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGc                                               >  3:165181/1‑149 (MQ=255)                                                                                                      aTCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTg                                                                                 >  8:239958/1‑114 (MQ=255)                                                                                                      aTCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTg                                                                                 <  7:239958/114‑1 (MQ=255)                                                                                                         aCCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTAGTGGGTCGATGGGCCAAg                                           <  2:295233/149‑1 (MQ=255)                                                                                                                 CCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAgg                                          >  6:270897‑M1/1‑142 (MQ=255)                                                                                                                 CCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAgg                                          <  5:270897‑M1/142‑1 (MQ=255)                                                                                                                   ACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATgg                                 <  3:37197‑M1/149‑1 (MQ=255)                                                                                                                   ACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATgg                                 >  2:303815‑M1/1‑149 (MQ=255)                                                                                                                    CGAGGTCGGGCCGCCGTCCTGGCGCGTGGGCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATggg                                >  6:55302‑M1/1‑149 (MQ=255)                                                                                                                     GAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATggg                                <  1:228837‑M1/148‑1 (MQ=255)                                                                                                                     GAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATggg                                >  2:228837‑M1/1‑148 (MQ=255)                                                                                                                     GAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATGGGt                               >  2:128460‑M1/1‑149 (MQ=255)                                                                                                                       gccaggacggcggcccgacctcgtggcCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTgg                                                                                                                     >  4:152940‑M2/28‑61 (MQ=255)                                                                                                                       gccaggacggcggcccgacctcgtggcCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTgg                                                                                                                     <  3:152940‑M2/34‑1 (MQ=255)                                                                                                                                 ccgTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATGGGTGAAGATGGTAcc                   >  4:245016/1‑149 (MQ=255)                                                                                                                                                gcCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCaa                                            <  6:71171‑M2/107‑1 (MQ=255)                                                                                                                                                gcCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCaa                                            >  5:71171‑M2/3‑109 (MQ=255)                                                                                                                                                gcCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATGGGTGAAGATGGTACCCAGGCCACGGTCGa     <  4:165181‑M2/146‑1 (MQ=255)                                                                                                                                                  cGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATGGGTGAAGATGGTACCCAGGCCACGGTCGACGt  >  8:295231/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCTTGCCGTCGCCATCGTGGTCGCCGGTCTTGATCACCGCCTGCCACGAGGTCGGGCCGCCGTCCTGGCGCGTGGCCGGGTTGTACAGCTGCTCGCCGGTTTCGGCGTGGTACCAGGTGGAACCGGCCGGTTCGGCCAGCACGGTGGCATACAGGCCCAGTTGCTGGTGGGTCGATGGGCCAAGGTGGTCATGGGTGAAGATGGTACCCAGGCCACGGTCGACGT  >  NC_002947/3956979‑3957272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.