New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4721005 =	41 (0.760)	4 (0.080)	4/254	NT	9.3%	coding (591/726 nt)	PP_4178	dienelactone hydrolase family protein
	?	NC_002947	4721065 =	39 (0.750)					coding (531/726 nt)	PP_4178	dienelactone hydrolase family protein

CCCCCTGCAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGG  >  NC_002947/4720858‑4721152                                                                                                                                                    |                                                                                                                                                    cccccTGCAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGa                                                                                                                                                    <  4:212636/149‑1 (MQ=255) cccccTGCAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGa                                                                                                                                                    <  4:147187/149‑1 (MQ=255)    ttggaactggcccgtagcggcgccgacctgcgtgcggccgtgtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaaGAGCa                                                                                                                                                 <  8:138455‑M1/5‑1 (MQ=255)       gCAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACt                                                                                                                                              >  6:180812/1‑149 (MQ=255)        cAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAAc                                                                                                                                               <  3:146620/147‑1 (MQ=255)        cAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTg                                                                                                                                             >  1:317324/1‑149 (MQ=255)          ctggcccgtagcggcgccgacctgcgtgcggccgtgtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaaGAGCAACTGc                                                                                                                                            <  7:21045‑M1/10‑1 (MQ=255)             tcAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGt                                                                                                                                        >  7:164991/1‑149 (MQ=255)               aaCGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAg                                                                                                                                         <  5:180812/146‑1 (MQ=255)                      gAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTg                                                                                                                                <  2:49561/148‑1 (MQ=255)                      gAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTg                                                                                                                                <  2:52028/148‑1 (MQ=255)                      gAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTg                                                                                                                                <  6:166280/148‑1 (MQ=255)                       gcgccgacctgcgtgcggccgtgtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaaGAGCAACTGCCAGTCCACCTTGGc                                                                                                                              <  2:319138‑M1/24‑1 (MQ=255)                          acTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCcgc                                                                                                                           <  2:284354/149‑1 (MQ=255)                                 tCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCAtc                                                                                                                    >  3:92453/1‑149 (MQ=255)                                   agcagATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCAtctc                                                                                                                  >  4:295141/1‑149 (MQ=255)                                         ttATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTc                                                                                                            <  2:317324/149‑1 (MQ=255)                                         ccgtgtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaag                                                                                                                                                     <  4:270575‑M1/1‑1 (MQ=255)                                         ccgtgtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaag                                                                                                                                                     >  3:270575‑M1/108‑108 (MQ=255)                                                   aacgaaACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCgg                                                                                                   >  3:173840/1‑148 (MQ=255)                                                       aaaCGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCAtct                                                                                                                   >  2:36976/1‑128 (MQ=255)                                                         caccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaaGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAgctgc                                                                                            >  3:154151‑M1/92‑149 (MQ=255)                                                             ctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaaGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCtt                                                                                        >  8:21045‑M1/88‑149 (MQ=255)                                                               gctcgGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTa                                                                                      <  2:278622/149‑1 (MQ=255)                                                               gctcgGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTa                                                                                      <  3:295141/149‑1 (MQ=255)                                                               gctcgGAAGTGCGCCGGTCATACTGCATCTTGCCCCGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGTGCACCTGCCAGTCCACCTTGGCCGCGGTCATCTCGTCTTCGAATGCCGGCAGCTGCTCttt                                                                                       <  8:145063/148‑1 (MQ=255)                                                                gacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaaGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAg                                                                                     >  1:319138‑M1/85‑149 (MQ=255)                                                                   ggAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGc                                                                                   <  4:56590/148‑1 (MQ=255)                                                                        tGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAAt                                                                             <  4:173840/149‑1 (MQ=255)                                                                               gTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCgg                                                                      <  4:259640/149‑1 (MQ=255)                                                                                 cATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAg                                                                    >  7:261756/1‑149 (MQ=255)                                                                                   tACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAgg                                                                   >  6:46546/1‑148 (MQ=255)                                                                                      tGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCAc                                                                >  5:272099/1‑148 (MQ=255)                                                                                              gCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGc                                                           <  8:235902/145‑1 (MQ=255)                                                                                                 cGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCa                                                    >  4:271140/1‑149 (MQ=255)                                                                                                       atTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATTGATCGGAGGCCACATGCAACAACAGCAcc                                               >  4:201934/1‑148 (MQ=255)                                                                                                        ttGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCTGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGa                                             >  2:101380/1‑149 (MQ=255)                                                                                                        ttGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCAcc                                               >  1:319047/1‑147 (MQ=255)                                                                                                         tGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCgg                                                                      <  1:112669/123‑1 (MQ=255)                                                                                                         tGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCgg                                                                      >  2:112669/1‑123 (MQ=255)                                                                                                          ggCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAg                                            <  7:11645/148‑1 (MQ=255)                                                                                                              ttCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCtt                                       >  6:10556/1‑149 (MQ=255)                                                                                                                 cgcgcGGTACACGAGGGCCCCGCGCCCCCGTAACCGACCAACTGCCCGGCCCCCTTGGCCGCGTCCAGCTCGTCTTCGAATGCCGGCAGCTCCTCTTTAGGCACCAATGCCTCGGAGGCACCATGCAACACCACCACCGAGCCCTTg                                      <  6:272099/143‑1 (MQ=255)                                                                                                                   gTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCgg                                                                      <  6:102849/113‑1 (MQ=255)                                                                                                                   gTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCgg                                                                      >  5:102849/1‑113 (MQ=255)                                                                                                                   gTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATgc                                  <  5:46546/149‑1 (MQ=255)                                                                                                                       gTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCtt                              >  7:76067/1‑149 (MQ=255)                                                                                                                          aaCGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATTCAACACCAGCACCGAGCCCTTGATGCGCTTgg                            <  1:40004/148‑1 (MQ=255)                                                                                                                                  cACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCa                    <  3:271140/148‑1 (MQ=255)                                                                                                                                   aCCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCCTCTTCGAATGCCGGCAGCTGCTCTTTAGGCCACAATGCATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCATCGCATCTTCAg                   >  5:269742/1‑148 (MQ=255)                                                                                                                                      gcgcCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGAtt               <  2:319047/149‑1 (MQ=255)                                                                                                                                                 aCTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCa    <  5:10556/149‑1 (MQ=255)                                                                                                                                                   tGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAgg  >  7:138455/1‑149 (MQ=255)                                                                                                                                                   tGACCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAgg  <  3:201934/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCCCCTGCAATCTCAACGCTGGAACACTTCACTCAGCAGATTATGCATCGAACGAAACGCTCGCTCGGAAGTGCGCCGGTCATACTGCATCTTGCCCGGCATATTGGCATTCGGGTCGGTAAACGAGTGCACCGCGCCGCCGTAACTGAGCAACTGCCAGTCCACCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGG  >  NC_002947/4720858‑4721152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.