New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4726198 | 51 (0.950) | 3 (0.060) | 3/252 | NT | 5.6% | coding (1184/1314 nt) | brnQ | branched‑chain amino acid transporter |
? | NC_002947 | = 4726268 | 53 (1.030) | coding (1114/1314 nt) | brnQ | branched‑chain amino acid transporter |
GGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAAT > NC_002947/4726051‑4726346 | ggCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCACAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCaa < 8:307064/149‑1 (MQ=255) gCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCaa > 1:338773/1‑148 (MQ=255) gCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCaa > 2:179393/1‑148 (MQ=255) ccACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGt > 5:114312/1‑149 (MQ=255) cTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTggg > 7:6657/1‑149 (MQ=255) cTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTggg > 8:12004/1‑149 (MQ=255) tCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCaa < 4:49644/148‑1 (MQ=255) tCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCaa < 7:12004/148‑1 (MQ=255) ccGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAgg < 4:13387/149‑1 (MQ=255) cGGTCAGGCCAGCGCCTCGCGCGGCTTGCGGAGCATGCGGTCGAAGGCCACGGCACCCACCAGGGTCACCACCTAAGGTACCAGCCTGCCCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAgg < 1:98158/149‑1 (MQ=255) cAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGgctgct < 2:70833/149‑1 (MQ=255) ggCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCtgctgc > 3:149572/1‑149 (MQ=255) gCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGcc < 5:329274/149‑1 (MQ=255) cAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCt < 4:30125/149‑1 (MQ=255) cAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCt < 5:237296/149‑1 (MQ=255) gcgcCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTg < 4:149572/149‑1 (MQ=255) cgGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGa < 5:260240/149‑1 (MQ=255) ggCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGAc < 2:76125/149‑1 (MQ=255) ggCTTGCCGAGCATGCGGGCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGAc < 7:259428/149‑1 (MQ=255) cTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCa < 2:50033/149‑1 (MQ=255) gCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATg < 5:179730/148‑1 (MQ=255) aGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGaa < 1:179393/149‑1 (MQ=255) gCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGaac < 2:93936/149‑1 (MQ=255) ggTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGc < 6:114312/149‑1 (MQ=255) ggCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCa < 2:256746/149‑1 (MQ=255) gCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAg > 2:59440/1‑149 (MQ=255) ggTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAcccgtgatgctggtatcgctgttgttcggcatggtcgatgcgatcaagggcagcagccttgcccacgtgttgccagac < 2:205009‑M1/149‑79 (MQ=255) gTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGAt < 1:54060/149‑1 (MQ=255) tCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATg > 4:261709/1‑149 (MQ=255) accaccGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATgc < 8:6657/148‑1 (MQ=255) ccaccGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAcccgtgatgctggtatcgctgttgttcggcatggtcgatgcgatcaagggcagcagccttgcccacgtgttgc > 3:101315‑M1/1‑66 (MQ=255) ccaccGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAcccgtgatgctggtatcgctgttgttcggcatggtcgatgcgatcaagggcagcagccttgcccacgtgttgc < 4:101315‑M1/139‑74 (MQ=255) ccaccGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATgcgc > 6:77108/1‑149 (MQ=255) caccGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGcgcg > 8:86361/1‑149 (MQ=255) accGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATCCCAGCCTCACGGGTGCCAGGATGCGCGt > 7:107429/1‑149 (MQ=255) ccGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGtt > 3:44155/1‑149 (MQ=255) cGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTg < 4:44155/149‑1 (MQ=255) cGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTg > 1:44086/1‑149 (MQ=255) cGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTg > 3:263216/1‑149 (MQ=255) ggTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGa < 5:77108/149‑1 (MQ=255) ccagccag‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTc > 6:231599/1‑149 (MQ=255) ccag‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCcaca < 7:86361/149‑1 (MQ=255) ag‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAgg > 2:237027/1‑149 (MQ=255) aTGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCttt > 8:191921/1‑149 (MQ=255) gCATCAGTCAATGGCAGGTTCGCCATTTAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAAGAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGGGAGTTCGACAGGTCTTTCACGaa < 7:152489/149‑1 (MQ=255) gCATCACTCAATGGCAGGTGCGCCATGAAGTCTCGCAACACGTGGGCAAGGCTGCTGCCCTTGATAGCATCGACCATGCCGAACAACAGCGATACCAGAATCACGCGTCCCACGATCCGCGATGGCGAGTTCCACAGGTCTTTAACg > 5:337392/1‑147 (MQ=255) tCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAgg > 5:9493/1‑149 (MQ=255) aaTGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGc > 5:229279/1‑148 (MQ=255) gCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAac < 3:261709/148‑1 (MQ=255) tGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAac < 1:338108/143‑1 (MQ=255) tGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAac > 2:338108/1‑143 (MQ=255) tGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACcaccac > 3:243459/1‑149 (MQ=255) cgcCATGAAGTCTGGCAACACGTGGGGAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGa < 4:243459/149‑1 (MQ=255) aGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGa < 7:198393/141‑1 (MQ=255) aGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGa > 8:198393/1‑141 (MQ=255) aGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCAcggc < 5:213038/149‑1 (MQ=255) gTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGtgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgacc < 2:205009‑M2/149‑72 (MQ=255) gTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCAcggcg < 3:316326/149‑1 (MQ=255) gCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGtgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtgg > 3:101315‑M2/1‑73 (MQ=255) gCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGtgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtgg < 4:101315‑M2/139‑67 (MQ=255) aaCACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAAt > 8:114538/1‑149 (MQ=255) | GGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAG‑GCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAAT > NC_002947/4726051‑4726346 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |