New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4726198 | 51 (0.950) | 3 (0.060) | 3/252 | NT | 5.6% | coding (1184/1314 nt) | brnQ | branched‑chain amino acid transporter |
? | NC_002947 | = 4726268 | 53 (1.030) | coding (1114/1314 nt) | brnQ | branched‑chain amino acid transporter |
GTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGAAATCAGCAGC > NC_002947/4726129‑4726410 | gTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGAt < 1:54060/149‑1 (MQ=255) tCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATg > 4:261709/1‑149 (MQ=255) accaccGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATgc < 8:6657/148‑1 (MQ=255) ccaccGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATgcgc > 6:77108/1‑149 (MQ=255) caccGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGcgcg > 8:86361/1‑149 (MQ=255) accGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATCCCAGCCTCACGGGTGCCAGGATGCGCGt > 7:107429/1‑149 (MQ=255) ccGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGtt > 3:44155/1‑149 (MQ=255) cGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTg > 1:44086/1‑149 (MQ=255) cGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTg < 4:44155/149‑1 (MQ=255) cGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTg > 3:263216/1‑149 (MQ=255) ggTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGa < 5:77108/149‑1 (MQ=255) ccagccagGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTc > 6:231599/1‑149 (MQ=255) ccagGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCcaca < 7:86361/149‑1 (MQ=255) agGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAgg > 2:237027/1‑149 (MQ=255) aTGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCttt > 8:191921/1‑149 (MQ=255) gCATCAGTCAATGGCAGGTTCGCCATTTAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAAGAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGGGAGTTCGACAGGTCTTTCACGaa < 7:152489/149‑1 (MQ=255) gCATCACTCAATGGCAGGTGCGCCATGAAGTCTCGCAACACGTGGGCAAGGCTGCTGCCCTTGATAGCATCGACCATGCCGAACAACAGCGATACCAGAATCACGCGTCCCACGATCCGCGATGGCGAGTTCCACAGGTCTTTAACg > 5:337392/1‑147 (MQ=255) tCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAgg > 5:9493/1‑149 (MQ=255) aaTGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGc > 5:229279/1‑148 (MQ=255) gCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAac < 3:261709/148‑1 (MQ=255) tGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAac > 2:338108/1‑143 (MQ=255) tGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAac < 1:338108/143‑1 (MQ=255) tGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACcaccac > 3:243459/1‑149 (MQ=255) cgcCATGAAGTCTGGCAACACGTGGGGAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGa < 4:243459/149‑1 (MQ=255) aGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGa > 8:198393/1‑141 (MQ=255) aGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGa < 7:198393/141‑1 (MQ=255) aGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCAcggc < 5:213038/149‑1 (MQ=255) gTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGtgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgacc < 2:205009‑M2/149‑72 (MQ=255) gTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCAcggcg < 3:316326/149‑1 (MQ=255) gCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGtgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtgg < 4:101315‑M2/139‑67 (MQ=255) gCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGtgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtgg > 3:101315‑M2/1‑73 (MQ=255) aaCACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAAt > 8:114538/1‑149 (MQ=255) cacGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATgg < 2:338773/149‑1 (MQ=255) acGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGc < 1:59440/149‑1 (MQ=255) cGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCg < 5:231599/149‑1 (MQ=255) gCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAg < 4:263216/149‑1 (MQ=255) ggCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGTCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCAcc < 1:237027/149‑1 (MQ=255) ggCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCAcc > 6:85661/1‑149 (MQ=255) ctgctgCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCgg < 6:229279/149‑1 (MQ=255) ccTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATc > 8:186566/1‑146 (MQ=255) gATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACa > 1:313527/1‑149 (MQ=255) tCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACAt > 7:11101/1‑148 (MQ=255) cATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGAt > 3:142659/1‑148 (MQ=255) aTGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGt < 2:313527/149‑1 (MQ=255) ccGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGGACCGGGATCGAGAACATGATCAGCTTGGTCa < 2:44086/148‑1 (MQ=255) ccGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAg > 3:251973/1‑149 (MQ=255) acGAACAACAGCGATACCAGCATCACGGGGTCCTTGATGCGAGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCTGGCCAAGCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTGAg < 6:337392/148‑1 (MQ=255) gAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGc < 7:114538/149‑1 (MQ=255) caacaGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGcc > 6:81332/1‑147 (MQ=255) aacaGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGAt < 3:154311/119‑1 (MQ=255) aacaGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGAt > 4:154311/1‑119 (MQ=255) acaGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAgg < 5:85661/149‑1 (MQ=255) cGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCTCAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTg > 1:229817/1‑148 (MQ=255) gATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGa < 8:11101/149‑1 (MQ=255) tACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGaaa < 4:251973/149‑1 (MQ=255) cAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGAAAt > 1:337519/1‑147 (MQ=255) cAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGAACGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGAAAt > 5:289305/1‑147 (MQ=255) aGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTgg > 1:133563/1‑142 (MQ=255) tCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGAAATCagcagc > 5:244087/1‑149 (MQ=255) aCGTGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACTATGCTCAGTCCAACCACCACGATTCACGGCTGATAAATGGCGGTGATCACCGGGATCGAGAAc < 2:329845/108‑1 (MQ=255) aCGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAAc > 1:329845/1‑108 (MQ=255) gggTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACa > 8:107922/1‑107 (MQ=255) gggTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACa < 7:107922/107‑1 (MQ=255) | GTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCTGCTGCCCTTGATCGCATCGACCATGCCGAACAACAGCGATACCAGCATCACGGGTGCCAGGATGCGCGTTGGCGAGTTCCACAGGTCTTTCACGAAGCTCAGGCCAACCACCACGATGCACGGCGGATAAATGGCGGTGAGCACCGGGATCGAGAACATGATCAGCTTGGTCAGGCCAAGGTTGGAAATCAGCAGC > NC_002947/4726129‑4726410 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |